Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LDB3O75112 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.33■□□□□ 0.53
LDB3O75112 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LDB3O75112 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LDB3O75112 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LDB3O75112 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.33■□□□□ 0.53
LDB3O75112 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LDB3O75112 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.33■□□□□ 0.52
LDB3O75112 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.33■□□□□ 0.52
LDB3O75112 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
LDB3O75112 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.33■□□□□ 0.52
LDB3O75112 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC18.33■□□□□ 0.52
LDB3O75112 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LDB3O75112 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.33■□□□□ 0.52
LDB3O75112 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
LDB3O75112 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LDB3O75112 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.33■□□□□ 0.52
LDB3O75112 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
LDB3O75112 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.33■□□□□ 0.52
LDB3O75112 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LDB3O75112 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LDB3O75112 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LDB3O75112 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.33■□□□□ 0.52
LDB3O75112 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.33■□□□□ 0.52
LDB3O75112 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LDB3O75112 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LDB3O75112 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LDB3O75112 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LDB3O75112 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LDB3O75112 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LDB3O75112 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
LDB3O75112 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
LDB3O75112 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
LDB3O75112 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LDB3O75112 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LDB3O75112 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LDB3O75112 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
LDB3O75112 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
LDB3O75112 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LDB3O75112 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.32■□□□□ 0.52
LDB3O75112 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LDB3O75112 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
LDB3O75112 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.32■□□□□ 0.52
LDB3O75112 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.32■□□□□ 0.52
LDB3O75112 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.32■□□□□ 0.52
LDB3O75112 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LDB3O75112 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
LDB3O75112 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC18.32■□□□□ 0.52
LDB3O75112 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC18.32■□□□□ 0.52
LDB3O75112 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
LDB3O75112 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LDB3O75112 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LDB3O75112 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
LDB3O75112 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.32■□□□□ 0.52
LDB3O75112 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LDB3O75112 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
LDB3O75112 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
LDB3O75112 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.32■□□□□ 0.52
LDB3O75112 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LDB3O75112 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.31■□□□□ 0.52
LDB3O75112 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.31■□□□□ 0.52
LDB3O75112 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
LDB3O75112 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
LDB3O75112 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LDB3O75112 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
LDB3O75112 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
LDB3O75112 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LDB3O75112 UBE2SP1-201ENST00000450587 669 ntBASIC18.31■□□□□ 0.52
LDB3O75112 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LDB3O75112 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.31■□□□□ 0.52
LDB3O75112 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.31■□□□□ 0.52
LDB3O75112 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LDB3O75112 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LDB3O75112 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LDB3O75112 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LDB3O75112 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.31■□□□□ 0.52
LDB3O75112 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
LDB3O75112 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LDB3O75112 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LDB3O75112 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.3■□□□□ 0.52
LDB3O75112 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LDB3O75112 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
LDB3O75112 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.3■□□□□ 0.52
LDB3O75112 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.3■□□□□ 0.52
LDB3O75112 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.3■□□□□ 0.52
LDB3O75112 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.3■□□□□ 0.52
LDB3O75112 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.3■□□□□ 0.52
LDB3O75112 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
LDB3O75112 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.3■□□□□ 0.52
LDB3O75112 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
LDB3O75112 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDB3O75112 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDB3O75112 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDB3O75112 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDB3O75112 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
LDB3O75112 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.3■□□□□ 0.52
LDB3O75112 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.3■□□□□ 0.52
LDB3O75112 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
LDB3O75112 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.3■□□□□ 0.52
LDB3O75112 C1QL1P1-201ENST00000568105 661 ntBASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms