Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
MSH4O15457 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
MSH4O15457 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
MSH4O15457 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC21.91■■□□□ 1.1
MSH4O15457 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC21.91■■□□□ 1.1
MSH4O15457 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
MSH4O15457 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC21.91■■□□□ 1.1
MSH4O15457 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
MSH4O15457 AL031985.4-201ENST00000642138 673 ntBASIC21.91■■□□□ 1.1
MSH4O15457 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
MSH4O15457 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
MSH4O15457 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
MSH4O15457 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC21.91■■□□□ 1.1
MSH4O15457 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.91■■□□□ 1.1
MSH4O15457 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
MSH4O15457 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
MSH4O15457 ANKRD18DP-204ENST00000455355 1975 ntBASIC21.9■■□□□ 1.1
MSH4O15457 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC21.9■■□□□ 1.1
MSH4O15457 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSH4O15457 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
MSH4O15457 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSH4O15457 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSH4O15457 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSH4O15457 MESTP1-201ENST00000404287 994 ntBASIC21.9■■□□□ 1.1
MSH4O15457 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC21.9■■□□□ 1.1
MSH4O15457 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC21.9■■□□□ 1.1
MSH4O15457 AL355075.4-201ENST00000554988 638 ntBASIC21.9■■□□□ 1.1
MSH4O15457 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC21.9■■□□□ 1.1
MSH4O15457 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSH4O15457 REXO1L10P-201ENST00000615707 1290 ntBASIC21.9■■□□□ 1.1
MSH4O15457 REXO1L12P-201ENST00000622156 912 ntBASIC21.9■■□□□ 1.1
MSH4O15457 AC131212.4-201ENST00000623606 975 ntBASIC21.9■■□□□ 1.1
MSH4O15457 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC21.9■■□□□ 1.1
MSH4O15457 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSH4O15457 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSH4O15457 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC21.9■■□□□ 1.1
MSH4O15457 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
MSH4O15457 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC21.9■■□□□ 1.1
MSH4O15457 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
MSH4O15457 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC21.9■■□□□ 1.1
MSH4O15457 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC21.9■■□□□ 1.1
MSH4O15457 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.1
MSH4O15457 AL158211.5-201ENST00000623583 2518 ntBASIC21.89■■□□□ 1.1
MSH4O15457 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC21.89■■□□□ 1.1
MSH4O15457 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
MSH4O15457 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC21.89■■□□□ 1.09
MSH4O15457 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC21.89■■□□□ 1.09
MSH4O15457 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC21.89■■□□□ 1.09
MSH4O15457 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC21.89■■□□□ 1.09
MSH4O15457 AC116562.2-201ENST00000507042 360 ntBASIC21.89■■□□□ 1.09
MSH4O15457 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC21.89■■□□□ 1.09
MSH4O15457 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC21.89■■□□□ 1.09
MSH4O15457 AC026271.3-201ENST00000571884 352 ntBASIC21.89■■□□□ 1.09
MSH4O15457 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.89■■□□□ 1.09
MSH4O15457 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
MSH4O15457 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC21.89■■□□□ 1.09
MSH4O15457 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC21.89■■□□□ 1.09
MSH4O15457 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
MSH4O15457 ADM-207ENST00000530439 1839 ntTSL 2 BASIC21.89■■□□□ 1.09
MSH4O15457 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
MSH4O15457 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
MSH4O15457 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
MSH4O15457 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.88■■□□□ 1.09
MSH4O15457 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC21.88■■□□□ 1.09
MSH4O15457 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH4O15457 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH4O15457 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC21.88■■□□□ 1.09
MSH4O15457 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH4O15457 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
MSH4O15457 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
MSH4O15457 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
MSH4O15457 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC21.88■■□□□ 1.09
MSH4O15457 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH4O15457 AC011506.1-201ENST00000474329 610 ntBASIC21.88■■□□□ 1.09
MSH4O15457 Z85996.1-201ENST00000494644 937 ntBASIC21.88■■□□□ 1.09
MSH4O15457 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC21.88■■□□□ 1.09
MSH4O15457 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC21.88■■□□□ 1.09
MSH4O15457 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
MSH4O15457 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC21.88■■□□□ 1.09
MSH4O15457 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC21.88■■□□□ 1.09
MSH4O15457 AL160286.2-201ENST00000567150 934 ntBASIC21.88■■□□□ 1.09
MSH4O15457 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC21.88■■□□□ 1.09
MSH4O15457 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC21.88■■□□□ 1.09
MSH4O15457 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC21.88■■□□□ 1.09
MSH4O15457 SNX21-213ENST00000614929 587 ntTSL 5 BASIC21.88■■□□□ 1.09
MSH4O15457 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH4O15457 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.88■■□□□ 1.09
MSH4O15457 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.88■■□□□ 1.09
MSH4O15457 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC21.88■■□□□ 1.09
MSH4O15457 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC21.88■■□□□ 1.09
MSH4O15457 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH4O15457 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH4O15457 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
MSH4O15457 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
MSH4O15457 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH4O15457 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC21.87■■□□□ 1.09
MSH4O15457 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH4O15457 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC21.87■■□□□ 1.09
MSH4O15457 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
MSH4O15457 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms