Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGN4O00479 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
HMGN4O00479 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.11■□□□□ 0.49
HMGN4O00479 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.11■□□□□ 0.49
HMGN4O00479 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
HMGN4O00479 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
HMGN4O00479 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
HMGN4O00479 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGN4O00479 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.11■□□□□ 0.49
HMGN4O00479 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
HMGN4O00479 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.11■□□□□ 0.49
HMGN4O00479 RNF165-205ENST00000588679 2904 ntBASIC18.11■□□□□ 0.49
HMGN4O00479 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGN4O00479 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
HMGN4O00479 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
HMGN4O00479 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGN4O00479 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.1■□□□□ 0.49
HMGN4O00479 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGN4O00479 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HMGN4O00479 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.1■□□□□ 0.49
HMGN4O00479 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGN4O00479 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGN4O00479 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.1■□□□□ 0.49
HMGN4O00479 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGN4O00479 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGN4O00479 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGN4O00479 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGN4O00479 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.1■□□□□ 0.49
HMGN4O00479 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.1■□□□□ 0.49
HMGN4O00479 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.1■□□□□ 0.49
HMGN4O00479 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.1■□□□□ 0.49
HMGN4O00479 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
HMGN4O00479 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HMGN4O00479 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.1■□□□□ 0.49
HMGN4O00479 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.1■□□□□ 0.49
HMGN4O00479 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.1■□□□□ 0.49
HMGN4O00479 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
HMGN4O00479 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGN4O00479 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGN4O00479 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGN4O00479 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.1■□□□□ 0.49
HMGN4O00479 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGN4O00479 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGN4O00479 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HMGN4O00479 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
HMGN4O00479 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
HMGN4O00479 AC141586.3-201ENST00000562166 1838 ntBASIC18.09■□□□□ 0.49
HMGN4O00479 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.09■□□□□ 0.49
HMGN4O00479 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HMGN4O00479 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HMGN4O00479 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HMGN4O00479 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.09■□□□□ 0.49
HMGN4O00479 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGN4O00479 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGN4O00479 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGN4O00479 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGN4O00479 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HMGN4O00479 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HMGN4O00479 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGN4O00479 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGN4O00479 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGN4O00479 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.09■□□□□ 0.49
HMGN4O00479 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.09■□□□□ 0.49
HMGN4O00479 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.09■□□□□ 0.49
HMGN4O00479 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGN4O00479 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HMGN4O00479 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.09■□□□□ 0.49
HMGN4O00479 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
HMGN4O00479 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGN4O00479 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGN4O00479 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
HMGN4O00479 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
HMGN4O00479 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
HMGN4O00479 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
HMGN4O00479 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
HMGN4O00479 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
HMGN4O00479 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.08■□□□□ 0.49
HMGN4O00479 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
HMGN4O00479 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
HMGN4O00479 AL161938.1-201ENST00000569833 2180 ntBASIC18.08■□□□□ 0.49
HMGN4O00479 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
HMGN4O00479 KRT8P8-201ENST00000434750 1448 ntBASIC18.08■□□□□ 0.49
HMGN4O00479 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
HMGN4O00479 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.08■□□□□ 0.49
HMGN4O00479 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.08■□□□□ 0.49
HMGN4O00479 AC093503.3-201ENST00000624917 2352 ntBASIC18.08■□□□□ 0.48
HMGN4O00479 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
HMGN4O00479 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
HMGN4O00479 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.08■□□□□ 0.48
HMGN4O00479 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.08■□□□□ 0.48
HMGN4O00479 AC090192.1-201ENST00000517740 490 ntBASIC18.08■□□□□ 0.48
HMGN4O00479 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.08■□□□□ 0.48
HMGN4O00479 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.08■□□□□ 0.48
HMGN4O00479 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.08■□□□□ 0.48
HMGN4O00479 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.08■□□□□ 0.48
HMGN4O00479 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
HMGN4O00479 AC008687.6-201ENST00000596318 630 ntBASIC18.08■□□□□ 0.48
HMGN4O00479 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.08■□□□□ 0.48
HMGN4O00479 AL121829.2-201ENST00000620908 328 ntBASIC18.08■□□□□ 0.48
HMGN4O00479 AC104417.2-201ENST00000562989 1793 ntBASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms