Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC19.92■□□□□ 0.78
CBX4O00257 FAM210CP-201ENST00000445714 574 ntBASIC19.92■□□□□ 0.78
CBX4O00257 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.92■□□□□ 0.78
CBX4O00257 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CBX4O00257 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CBX4O00257 KRT18P21-201ENST00000515767 1272 ntBASIC19.92■□□□□ 0.78
CBX4O00257 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19.92■□□□□ 0.78
CBX4O00257 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CBX4O00257 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC19.92■□□□□ 0.78
CBX4O00257 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.92■□□□□ 0.78
CBX4O00257 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.92■□□□□ 0.78
CBX4O00257 AC073195.1-201ENST00000607241 877 ntBASIC19.92■□□□□ 0.78
CBX4O00257 AL353708.3-201ENST00000610272 989 ntBASIC19.92■□□□□ 0.78
CBX4O00257 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CBX4O00257 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
CBX4O00257 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.92■□□□□ 0.78
CBX4O00257 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
CBX4O00257 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.92■□□□□ 0.78
CBX4O00257 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CBX4O00257 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.92■□□□□ 0.78
CBX4O00257 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CBX4O00257 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.92■□□□□ 0.78
CBX4O00257 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CBX4O00257 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CBX4O00257 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CBX4O00257 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.91■□□□□ 0.78
CBX4O00257 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CBX4O00257 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.91■□□□□ 0.78
CBX4O00257 NIFKP9-201ENST00000419265 221 ntBASIC19.91■□□□□ 0.78
CBX4O00257 FAM197Y1-201ENST00000421178 764 ntBASIC19.91■□□□□ 0.78
CBX4O00257 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC19.91■□□□□ 0.78
CBX4O00257 TSPY15P-201ENST00000457163 923 ntBASIC19.91■□□□□ 0.78
CBX4O00257 PENK-204ENST00000518770 863 ntTSL 2 BASIC19.91■□□□□ 0.78
CBX4O00257 BX088651.1-201ENST00000540551 451 ntBASIC19.91■□□□□ 0.78
CBX4O00257 CD177P1-201ENST00000606252 935 ntBASIC19.91■□□□□ 0.78
CBX4O00257 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CBX4O00257 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
CBX4O00257 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CBX4O00257 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
CBX4O00257 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CBX4O00257 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CBX4O00257 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CBX4O00257 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.91■□□□□ 0.78
CBX4O00257 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CBX4O00257 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.91■□□□□ 0.78
CBX4O00257 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.91■□□□□ 0.78
CBX4O00257 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
CBX4O00257 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CBX4O00257 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CBX4O00257 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CBX4O00257 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CBX4O00257 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CBX4O00257 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CBX4O00257 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CBX4O00257 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CBX4O00257 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
CBX4O00257 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
CBX4O00257 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CBX4O00257 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC19.9■□□□□ 0.78
CBX4O00257 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC19.9■□□□□ 0.78
CBX4O00257 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
CBX4O00257 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC19.9■□□□□ 0.78
CBX4O00257 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC19.9■□□□□ 0.78
CBX4O00257 CR392000.1-201ENST00000624770 1228 ntBASIC19.9■□□□□ 0.78
CBX4O00257 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CBX4O00257 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CBX4O00257 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CBX4O00257 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.9■□□□□ 0.78
CBX4O00257 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CBX4O00257 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CBX4O00257 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CBX4O00257 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.89■□□□□ 0.78
CBX4O00257 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.89■□□□□ 0.78
CBX4O00257 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CBX4O00257 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CBX4O00257 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CBX4O00257 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CBX4O00257 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CBX4O00257 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
CBX4O00257 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.89■□□□□ 0.77
CBX4O00257 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CBX4O00257 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CBX4O00257 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CBX4O00257 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC19.89■□□□□ 0.77
CBX4O00257 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CBX4O00257 KSR1P1-201ENST00000446298 240 ntBASIC19.89■□□□□ 0.77
CBX4O00257 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.89■□□□□ 0.77
CBX4O00257 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC19.89■□□□□ 0.77
CBX4O00257 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.89■□□□□ 0.77
CBX4O00257 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
CBX4O00257 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CBX4O00257 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
CBX4O00257 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CBX4O00257 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.88■□□□□ 0.77
CBX4O00257 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CBX4O00257 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
CBX4O00257 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.88■□□□□ 0.77
CBX4O00257 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
CBX4O00257 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CBX4O00257 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms