Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
PCDH9Q9HC56 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.09□□□□□ -1.59
PCDH9Q9HC56 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.6
PCDH9Q9HC56 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
PCDH9Q9HC56 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 AL034370.1-201ENST00000397254 1590 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 BTBD10P1-201ENST00000549824 1352 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 HSPA8P18-201ENST00000439846 1928 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 MIR16-2-201ENST00000362117 81 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 RN7SKP74-201ENST00000362849 309 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 RNU6-729P-201ENST00000384399 107 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 SPTLC1P2-201ENST00000407089 121 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 AC093162.1-201ENST00000419682 124 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 EIF4A1P1-201ENST00000420241 934 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 EIF4HP2-201ENST00000424380 563 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 OR7E125P-201ENST00000443450 846 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 MRPL48P1-201ENST00000445390 636 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 AC073850.1-201ENST00000449243 255 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 MTATP6P14-201ENST00000455189 673 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 RPS4XP12-201ENST00000461747 709 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 AC112206.1-201ENST00000468416 477 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 NPM1P29-201ENST00000483112 803 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 RN7SL205P-201ENST00000490174 284 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 AC008638.1-201ENST00000506035 866 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 AC110760.3-202ENST00000515177 371 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 RN7SKP46-201ENST00000515942 234 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 RN7SKP147-201ENST00000517154 244 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 Y_RNA.719-201ENST00000517156 106 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 AC013701.1-201ENST00000522657 465 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 C1DP5-201ENST00000525775 383 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 AC023158.1-201ENST00000561632 1025 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 EIF1P5-201ENST00000585002 234 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 AC027449.1-201ENST00000608890 407 ntBASIC5.08□□□□□ -1.6
PCDH9Q9HC56 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC5.08□□□□□ -1.6
PCDH9Q9HC56 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
PCDH9Q9HC56 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.07□□□□□ -1.6
PCDH9Q9HC56 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
PCDH9Q9HC56 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
PCDH9Q9HC56 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
PCDH9Q9HC56 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.07□□□□□ -1.6
PCDH9Q9HC56 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.07□□□□□ -1.6
PCDH9Q9HC56 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
PCDH9Q9HC56 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC5.07□□□□□ -1.6
PCDH9Q9HC56 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
PCDH9Q9HC56 RNA5SP305-201ENST00000362665 119 ntBASIC5.07□□□□□ -1.6
PCDH9Q9HC56 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
PCDH9Q9HC56 RNU6-1320P-201ENST00000390838 107 ntBASIC5.07□□□□□ -1.6
PCDH9Q9HC56 RNU6-1269P-201ENST00000391139 107 ntBASIC5.07□□□□□ -1.6
PCDH9Q9HC56 RN7SKP278-201ENST00000410504 342 ntBASIC5.07□□□□□ -1.6
PCDH9Q9HC56 GJA6P-201ENST00000415117 1042 ntBASIC5.07□□□□□ -1.6
PCDH9Q9HC56 RPL23AP27-201ENST00000415161 451 ntBASIC5.07□□□□□ -1.6
PCDH9Q9HC56 AC073310.1-201ENST00000423226 1033 ntBASIC5.07□□□□□ -1.6
PCDH9Q9HC56 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC5.07□□□□□ -1.6
PCDH9Q9HC56 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms