Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 AC104308.1-201ENST00000454621 333 ntBASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 RPL18AP17-201ENST00000455326 198 ntBASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 AL391863.1-202ENST00000457427 612 ntTSL 5 BASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 AC055733.3-201ENST00000505214 523 ntBASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 MTCO3P44-201ENST00000510977 541 ntBASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 AC098487.1-203ENST00000512915 546 ntTSL 5 BASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 Y_RNA.721-201ENST00000517207 102 ntBASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 AC105150.1-201ENST00000518011 551 ntTSL 3 BASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 COX6B1P4-201ENST00000519826 484 ntBASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 AP001007.2-201ENST00000525429 593 ntTSL 3 BASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 RAB30-209ENST00000532548 644 ntTSL 3 BASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 AL135978.1-201ENST00000553618 1266 ntBASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 AC090181.1-201ENST00000560446 264 ntTSL 3 BASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 IDH3A-223ENST00000561366 389 ntTSL 3 BASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 HMGB1P6-201ENST00000569046 646 ntBASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 AC091932.1-201ENST00000569381 427 ntBASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 AL683813.2-201ENST00000605245 502 ntBASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 SMAGP-208ENST00000605627 577 ntTSL 5 BASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 AC133104.2-201ENST00000615272 193 ntBASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 PCBP1-AS1-359ENST00000630283 1063 ntTSL 5 BASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 AC243725.1-201ENST00000637164 436 ntBASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 MKKS-204ENST00000639674 192 ntBASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 ZC3H8-202ENST00000409573 5965 ntAPPRIS P2 TSL 5 BASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 SLC3A1-206ENST00000409740 1418 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 NSA2-205ENST00000610426 4594 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 AL160408.3-201ENST00000442382 3564 ntTSL 2 BASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 LRRC37B-201ENST00000327564 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 LPAR1-205ENST00000541779 2490 ntAPPRIS ALT1 TSL 1 (best) BASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 BEST3-212ENST00000553096 2929 ntTSL 1 (best) BASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 SPTLC3-201ENST00000399002 6169 ntAPPRIS P1 TSL 1 (best) BASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 RNF6P1-201ENST00000444889 1784 ntBASIC9.27□□□□□ -0.93
TRIM35Q9UPQ4 PPARGC1B-201ENST00000309241 10568 ntAPPRIS P3 TSL 1 (best) BASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 MKL2-209ENST00000574045 3309 ntAPPRIS P3 TSL 1 (best) BASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 IL22RA2-201ENST00000296980 2886 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 DAZ1-203ENST00000426000 1846 ntTSL 5 BASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 ABCD3-202ENST00000370214 3538 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 CBFA2T2-209ENST00000492345 7803 ntTSL 5 BASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 BRDT-202ENST00000362005 3409 ntAPPRIS P3 TSL 1 (best) BASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 HTR2C-202ENST00000371950 4652 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 PPARA-201ENST00000262735 9965 ntAPPRIS P1 TSL 5 BASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 MTCO1P14-201ENST00000441695 1559 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 PFKFB1-203ENST00000545676 1591 ntTSL 2 BASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 RNU6-1159P-201ENST00000362933 107 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 RN7SKP55-201ENST00000364888 307 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 RNU6-662P-201ENST00000384253 104 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 Y_RNA.512-201ENST00000384518 102 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 TRGV3-201ENST00000390346 537 ntAPPRIS P1 BASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 ZNF37CP-201ENST00000406795 241 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 AL139100.1-201ENST00000408001 498 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 MIR548K-201ENST00000408406 116 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 MIR548F5-201ENST00000408421 86 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 RN7SKP232-201ENST00000410170 290 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 AC080125.1-201ENST00000414888 684 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 AC073335.1-201ENST00000427776 363 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 AC007559.1-201ENST00000428736 355 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 RPEP2-201ENST00000432149 701 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 RPS7P4-201ENST00000444127 582 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 RPL21P23-201ENST00000446654 460 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 MTCO1P42-201ENST00000457379 726 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 AC016687.1-201ENST00000482574 353 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 RN7SL143P-201ENST00000496780 297 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 HMGB1P28-201ENST00000507778 552 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 TMEM248P1-201ENST00000510579 951 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 RNU6-138P-201ENST00000515952 107 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 AP005902.2-201ENST00000518393 307 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 SSU72P6-201ENST00000532644 488 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 CYCSP2-201ENST00000558168 301 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 MIR544B-201ENST00000582372 78 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 MIR5682-201ENST00000584864 76 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 AC068802.1-201ENST00000603420 732 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 AL050403.2-202ENST00000603462 492 ntTSL 5 BASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 RNF138P2-201ENST00000603490 592 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 AL078624.2-201ENST00000605063 554 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 AC243829.2-201ENST00000617914 470 ntTSL 3 BASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 AL354950.2-201ENST00000617939 290 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 AC087565.2-201ENST00000637695 952 ntTSL 5 BASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 DMC1-203ENST00000428462 2082 ntTSL 2 BASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 LYSMD3-203ENST00000500869 3863 ntTSL 1 (best) BASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 AC079777.1-201ENST00000623836 1953 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 ADGRL3-209ENST00000508693 5009 ntTSL 5 BASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 ITPK1-AS1-201ENST00000553639 4701 ntBASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC9.26□□□□□ -0.93
TRIM35Q9UPQ4 LARP1B-203ENST00000432347 2707 ntTSL 1 (best) BASIC9.25□□□□□ -0.93
TRIM35Q9UPQ4 AC034111.1-201ENST00000562143 3770 ntBASIC9.25□□□□□ -0.93
TRIM35Q9UPQ4 PSG1-203ENST00000403380 1722 ntTSL 2 BASIC9.25□□□□□ -0.93
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms