RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 AEBP2Q6ZN18 517 aaPredicted RBP18.48■□□□□ 0.55
HMGB1P28-201ENST00000507778 CHIC1Q5VXU3 224 aa18.36■□□□□ 0.53
HMGB1P28-201ENST00000507778 PHF23Q9BUL5 403 aaPredicted RBP16.17■□□□□ 0.18
HMGB1P28-201ENST00000507778 SENP3Q9H4L4 574 aaPredicted RBP15.86■□□□□ 0.13
HMGB1P28-201ENST00000507778 PLPPR3Q6T4P5 718 aa15.06■□□□□ 0
HMGB1P28-201ENST00000507778 FOXD1Q16676 465 aa14.7□□□□□ -0.06
HMGB1P28-201ENST00000507778 ADRA2BP18089 450 aa14.18□□□□□ -0.14
HMGB1P28-201ENST00000507778 PPP6R1Q9UPN7 881 aa14.17□□□□□ -0.14
HMGB1P28-201ENST00000507778 PIAS4Q8N2W9 510 aaPredicted RBP13.81□□□□□ -0.2
HMGB1P28-201ENST00000507778 MSH5O43196 834 aa13.78□□□□□ -0.2
HMGB1P28-201ENST00000507778 KCNA4P22459 653 aa13.36□□□□□ -0.27
HMGB1P28-201ENST00000507778 PPP4R3CPQ6ZMV5 832 aa13.31□□□□□ -0.28
HMGB1P28-201ENST00000507778 POTEDQ86YR6 584 aa13.14□□□□□ -0.31
HMGB1P28-201ENST00000507778 NCBP3Q53F19 620 aaKnown RBP13.08□□□□□ -0.32
HMGB1P28-201ENST00000507778 SCAF1Q9H7N4 1312 aaKnown RBP13.01□□□□□ -0.33
HMGB1P28-201ENST00000507778 CNKSR2Q8WXI2 1034 aa12.87□□□□□ -0.35
HMGB1P28-201ENST00000507778 NPM3O75607 178 aaKnown RBP12.86□□□□□ -0.35
HMGB1P28-201ENST00000507778 EHMT2Q96KQ7 1210 aa12.79□□□□□ -0.36
HMGB1P28-201ENST00000507778 SLC4A1APQ9BWU0 796 aaKnown RBP12.79□□□□□ -0.36
HMGB1P28-201ENST00000507778 MAPK8IP2Q13387 824 aaPredicted RBP12.77□□□□□ -0.37
HMGB1P28-201ENST00000507778 DMRT2Q9Y5R5 561 aa12.55□□□□□ -0.4
HMGB1P28-201ENST00000507778 RNF216Q9NWF9 866 aaPredicted RBP12.54□□□□□ -0.4
HMGB1P28-201ENST00000507778 CSRNP3Q8WYN3 585 aa12.49□□□□□ -0.41
HMGB1P28-201ENST00000507778 DNAJC5BQ9UF47 199 aa12.44□□□□□ -0.42
HMGB1P28-201ENST00000507778 HOXD11P31277 338 aaPredicted RBP12.39□□□□□ -0.43
HMGB1P28-201ENST00000507778 ZBTB22O15209 634 aa12.28□□□□□ -0.44
HMGB1P28-201ENST00000507778 FOXD4L1Q9NU39 408 aa12.21□□□□□ -0.45
HMGB1P28-201ENST00000507778 DCAF8L1A6NGE4 600 aa12.14□□□□□ -0.47
HMGB1P28-201ENST00000507778 SLC4A2P04920 1241 aa12.05□□□□□ -0.48
HMGB1P28-201ENST00000507778 MYCNP04198 464 aaPredicted RBP11.88□□□□□ -0.51
HMGB1P28-201ENST00000507778 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.84□□□□□ -0.51
HMGB1P28-201ENST00000507778 ATXN8OSP0DMR3 200 aa11.77□□□□□ -0.53
HMGB1P28-201ENST00000507778 CACNB1Q02641 598 aaPredicted RBP11.77□□□□□ -0.53
HMGB1P28-201ENST00000507778 RNF39Q9H2S5 420 aa11.71□□□□□ -0.53
HMGB1P28-201ENST00000507778 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.65□□□□□ -0.54
HMGB1P28-201ENST00000507778 HNRNPUL2Q1KMD3 747 aaKnown RBP11.65□□□□□ -0.54
HMGB1P28-201ENST00000507778 U3KPZ7 1027 aaPredicted RBP11.65□□□□□ -0.54
HMGB1P28-201ENST00000507778 C1QBPQ07021 282 aaKnown RBP11.62□□□□□ -0.55
HMGB1P28-201ENST00000507778 SAMD1Q6SPF0 538 aaPredicted RBP11.61□□□□□ -0.55
HMGB1P28-201ENST00000507778 ATF5Q9Y2D1 282 aaPredicted RBP11.52□□□□□ -0.57
HMGB1P28-201ENST00000507778 APLP2Q06481 763 aa11.46□□□□□ -0.57
HMGB1P28-201ENST00000507778 ZNF219Q9P2Y4 722 aaPredicted RBP11.34□□□□□ -0.59
HMGB1P28-201ENST00000507778 FKBP8Q14318 412 aa11.28□□□□□ -0.6
HMGB1P28-201ENST00000507778 SPINK5Q9NQ38 1064 aaPredicted RBP11.23□□□□□ -0.61
HMGB1P28-201ENST00000507778 TRHP20396 242 aaPredicted RBP11.22□□□□□ -0.61
HMGB1P28-201ENST00000507778 CAPN15O75808 1086 aa11.2□□□□□ -0.62
HMGB1P28-201ENST00000507778 POLA2Q14181 598 aa11.11□□□□□ -0.63
HMGB1P28-201ENST00000507778 FBLN2P98095 1184 aa11.05□□□□□ -0.64
HMGB1P28-201ENST00000507778 MKRN4PQ13434 485 aaPredicted RBP11.04□□□□□ -0.64
HMGB1P28-201ENST00000507778 DSG3P32926 999 aa11.03□□□□□ -0.64
HMGB1P28-201ENST00000507778 ABCB7O75027 752 aa10.99□□□□□ -0.65
HMGB1P28-201ENST00000507778 SPDYE4A6NLX3 237 aa10.97□□□□□ -0.65
HMGB1P28-201ENST00000507778 ZBTB12Q9Y330 459 aaPredicted RBP10.97□□□□□ -0.65
HMGB1P28-201ENST00000507778 AMER1Q5JTC6 1135 aaPredicted RBP10.85□□□□□ -0.67
HMGB1P28-201ENST00000507778 FBXO3Q9UK99 471 aa10.82□□□□□ -0.68
HMGB1P28-201ENST00000507778 PROM2Q8N271 834 aa10.81□□□□□ -0.68
HMGB1P28-201ENST00000507778 RTN4Q9NQC3 1192 aaKnown RBP10.81□□□□□ -0.68
HMGB1P28-201ENST00000507778 ZNF692Q9BU19 519 aaPredicted RBP10.7□□□□□ -0.7
HMGB1P28-201ENST00000507778 OSCARQ8IYS5 282 aa10.69□□□□□ -0.7
HMGB1P28-201ENST00000507778 SPDYE2BA6NHP3 402 aa10.68□□□□□ -0.7
HMGB1P28-201ENST00000507778 SPDYE6P0CI01 402 aa10.68□□□□□ -0.7
HMGB1P28-201ENST00000507778 SPDYE2Q495Y8 402 aa10.68□□□□□ -0.7
HMGB1P28-201ENST00000507778 VASPP50552 380 aaPredicted RBP10.64□□□□□ -0.71
HMGB1P28-201ENST00000507778 SSUH2Q9Y2M2 353 aa10.62□□□□□ -0.71
HMGB1P28-201ENST00000507778 RBM42Q9BTD8 480 aaKnown RBP10.6□□□□□ -0.71
HMGB1P28-201ENST00000507778 PABPN1Q86U42 306 aaKnown RBP eCLIP10.56□□□□□ -0.72
HMGB1P28-201ENST00000507778 STAG3Q9UJ98 1225 aa10.52□□□□□ -0.73
HMGB1P28-201ENST00000507778 IFNLR1Q8IU57 520 aaPredicted RBP10.51□□□□□ -0.73
HMGB1P28-201ENST00000507778 KLHL34Q8N239 644 aa10.42□□□□□ -0.74
HMGB1P28-201ENST00000507778 PLCD3Q8N3E9 789 aa10.41□□□□□ -0.74
HMGB1P28-201ENST00000507778 MIER1Q8N108 512 aa10.39□□□□□ -0.75
HMGB1P28-201ENST00000507778 POTEHQ6S545 545 aa10.36□□□□□ -0.75
HMGB1P28-201ENST00000507778 SPOCK2Q92563 424 aa10.36□□□□□ -0.75
HMGB1P28-201ENST00000507778 AKT1S1Q96B36 256 aa10.36□□□□□ -0.75
HMGB1P28-201ENST00000507778 PLEKHG5O94827 1062 aa10.33□□□□□ -0.76
HMGB1P28-201ENST00000507778 SLC24A1O60721 1099 aa10.3□□□□□ -0.76
HMGB1P28-201ENST00000507778 SPDYE1Q8NFV5 336 aaPredicted RBP10.3□□□□□ -0.76
HMGB1P28-201ENST00000507778 PKD2Q13563 968 aa10.28□□□□□ -0.76
HMGB1P28-201ENST00000507778 ZBTB47Q9UFB7 747 aaPredicted RBP10.28□□□□□ -0.76
HMGB1P28-201ENST00000507778 CHRDL2Q6WN34 429 aa10.26□□□□□ -0.77
HMGB1P28-201ENST00000507778 REM2Q8IYK8 340 aaPredicted RBP10.24□□□□□ -0.77
HMGB1P28-201ENST00000507778 CLEC11AQ9Y240 323 aa10.23□□□□□ -0.77
HMGB1P28-201ENST00000507778 DCAF8L2P0C7V8 631 aa10.2□□□□□ -0.78
HMGB1P28-201ENST00000507778 ECM2O94769 699 aaPredicted RBP10.19□□□□□ -0.78
HMGB1P28-201ENST00000507778 PRR29P0C7W0 189 aa10.19□□□□□ -0.78
HMGB1P28-201ENST00000507778 CIZ1Q9ULV3 898 aaPredicted RBP10.14□□□□□ -0.79
HMGB1P28-201ENST00000507778 CREBZFQ9NS37 354 aa10.12□□□□□ -0.79
HMGB1P28-201ENST00000507778 PITPNM1O00562 1244 aa10.11□□□□□ -0.79
HMGB1P28-201ENST00000507778 NUBP1P53384 320 aa10.07□□□□□ -0.8
HMGB1P28-201ENST00000507778 GSE1Q14687 1217 aa10.06□□□□□ -0.8
HMGB1P28-201ENST00000507778 TRIM41Q8WV44 630 aa10.06□□□□□ -0.8
HMGB1P28-201ENST00000507778 RGL2O15211 777 aa10.05□□□□□ -0.8
HMGB1P28-201ENST00000507778 MNX1P50219 401 aaPredicted RBP10.04□□□□□ -0.8
HMGB1P28-201ENST00000507778 PLCB2Q00722 1185 aa10.03□□□□□ -0.8
HMGB1P28-201ENST00000507778 DCAF8Q5TAQ9 597 aa10.02□□□□□ -0.81
HMGB1P28-201ENST00000507778 PIP4P2Q8N4L2 257 aa10.02□□□□□ -0.81
HMGB1P28-201ENST00000507778 FXR2P51116 673 aaKnown RBP eCLIP9.99□□□□□ -0.81
HMGB1P28-201ENST00000507778 FAM212AQ96EL1 285 aa9.99□□□□□ -0.81
HMGB1P28-201ENST00000507778 NPM1P06748 294 aaKnown RBP eCLIP9.98□□□□□ -0.81
HMGB1P28-201ENST00000507778 BBXQ8WY36 941 aaPredicted RBP9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms