Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
HTTP42858 ZFX-204ENST00000379188 7513 ntTSL 5 BASIC4.9□□□□□ -1.63
HTTP42858 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
HTTP42858 GLRA2-201ENST00000218075 3216 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
HTTP42858 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.89□□□□□ -1.63
HTTP42858 AC105233.3-201ENST00000531125 744 ntBASIC4.89□□□□□ -1.63
HTTP42858 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC4.89□□□□□ -1.63
HTTP42858 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC4.89□□□□□ -1.63
HTTP42858 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC4.89□□□□□ -1.63
HTTP42858 GGCX-201ENST00000233838 7569 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HTTP42858 NUP98-202ENST00000355260 5628 ntTSL 5 BASIC4.89□□□□□ -1.63
HTTP42858 CLASP1-203ENST00000409078 8002 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
HTTP42858 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC4.89□□□□□ -1.63
HTTP42858 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
HTTP42858 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC4.89□□□□□ -1.63
HTTP42858 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HTTP42858 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HTTP42858 HTR2C-202ENST00000371950 4652 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HTTP42858 SLC4A10-204ENST00000421911 3398 ntTSL 5 BASIC4.89□□□□□ -1.63
HTTP42858 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HTTP42858 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HTTP42858 ARAFP1-201ENST00000422172 605 ntBASIC4.89□□□□□ -1.63
HTTP42858 AC138761.5-201ENST00000433967 325 ntBASIC4.89□□□□□ -1.63
HTTP42858 EIF4A2P2-201ENST00000455776 1070 ntBASIC4.89□□□□□ -1.63
HTTP42858 snoU13.29-201ENST00000459370 104 ntBASIC4.89□□□□□ -1.63
HTTP42858 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HTTP42858 ENSA-211ENST00000503345 793 ntTSL 3 BASIC4.89□□□□□ -1.63
HTTP42858 AC099522.1-202ENST00000514718 367 ntBASIC4.89□□□□□ -1.63
HTTP42858 RNU6-352P-201ENST00000516908 107 ntBASIC4.89□□□□□ -1.63
HTTP42858 AC026367.3-201ENST00000619032 590 ntBASIC4.89□□□□□ -1.63
HTTP42858 GMDS-AS1-202ENST00000505870 8217 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
HTTP42858 MAP1B-201ENST00000296755 12036 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HTTP42858 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HTTP42858 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HTTP42858 POLR3A-201ENST00000372371 6640 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
HTTP42858 ADAM24P-201ENST00000398655 2101 ntBASIC4.89□□□□□ -1.63
HTTP42858 DTNA-204ENST00000348997 4518 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
HTTP42858 COBLL1-203ENST00000392717 9523 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
HTTP42858 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.89□□□□□ -1.63
HTTP42858 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HTTP42858 CSNK1G1-201ENST00000303052 8179 ntAPPRIS P2 TSL 1 (best) BASIC4.88□□□□□ -1.63
HTTP42858 AL035696.2-201ENST00000407941 709 ntBASIC4.88□□□□□ -1.63
HTTP42858 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4.88□□□□□ -1.63
HTTP42858 AL935212.3-201ENST00000450729 284 ntBASIC4.88□□□□□ -1.63
HTTP42858 RPS20P21-201ENST00000466859 343 ntBASIC4.88□□□□□ -1.63
HTTP42858 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.88□□□□□ -1.63
HTTP42858 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC4.88□□□□□ -1.63
HTTP42858 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC4.88□□□□□ -1.63
HTTP42858 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HTTP42858 ZNF148-201ENST00000360647 9651 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HTTP42858 HIVEP3-202ENST00000372584 12319 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
HTTP42858 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
HTTP42858 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HTTP42858 LINC01013-205ENST00000458028 1345 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HTTP42858 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HTTP42858 RNA5SP151-201ENST00000365632 117 ntBASIC4.88□□□□□ -1.63
HTTP42858 OR8F1P-201ENST00000425243 930 ntBASIC4.88□□□□□ -1.63
HTTP42858 RN7SL293P-201ENST00000481765 281 ntBASIC4.88□□□□□ -1.63
HTTP42858 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC4.88□□□□□ -1.63
HTTP42858 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC4.88□□□□□ -1.63
HTTP42858 AC025857.2-201ENST00000602711 238 ntBASIC4.88□□□□□ -1.63
HTTP42858 AC015722.2-201ENST00000622210 551 ntBASIC4.88□□□□□ -1.63
HTTP42858 MIR3651-201ENST00000630427 90 ntBASIC4.88□□□□□ -1.63
HTTP42858 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC4.88□□□□□ -1.63
HTTP42858 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
HTTP42858 LRRC8B-203ENST00000439853 7474 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HTTP42858 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HTTP42858 PTPN3-204ENST00000446349 8630 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HTTP42858 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HTTP42858 RUNX1T1-249ENST00000613886 7401 ntAPPRIS ALT1 TSL 5 BASIC4.88□□□□□ -1.63
HTTP42858 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
HTTP42858 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC4.88□□□□□ -1.63
HTTP42858 AP001610.2-201ENST00000415820 422 ntTSL 3 BASIC4.88□□□□□ -1.63
HTTP42858 RPL21P43-201ENST00000425440 472 ntBASIC4.88□□□□□ -1.63
HTTP42858 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.88□□□□□ -1.63
HTTP42858 RPEP2-201ENST00000432149 701 ntBASIC4.88□□□□□ -1.63
HTTP42858 PPIAP3-201ENST00000450588 505 ntBASIC4.88□□□□□ -1.63
HTTP42858 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.88□□□□□ -1.63
HTTP42858 AGGF1P9-201ENST00000561884 913 ntBASIC4.88□□□□□ -1.63
HTTP42858 AC008013.2-202ENST00000637965 364 ntBASIC4.88□□□□□ -1.63
HTTP42858 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HTTP42858 POGZ-204ENST00000392723 6152 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HTTP42858 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HTTP42858 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC4.87□□□□□ -1.63
HTTP42858 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
HTTP42858 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HTTP42858 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC4.87□□□□□ -1.63
HTTP42858 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HTTP42858 GANC-201ENST00000318010 7781 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HTTP42858 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
HTTP42858 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HTTP42858 RNU6-1279P-201ENST00000383917 103 ntBASIC4.87□□□□□ -1.63
HTTP42858 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.87□□□□□ -1.63
HTTP42858 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC4.87□□□□□ -1.63
HTTP42858 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC4.87□□□□□ -1.63
HTTP42858 AC027667.1-201ENST00000545814 304 ntBASIC4.87□□□□□ -1.63
HTTP42858 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC4.87□□□□□ -1.63
HTTP42858 AC024023.1-201ENST00000624530 922 ntBASIC4.87□□□□□ -1.63
HTTP42858 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.87□□□□□ -1.63
HTTP42858 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms