RNA–Protein interactions for RNA: ENST00000446349.5

PTPN3-204, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 1 (best) BASIC

Gene PTPN3, Length 8,630 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-204ENST00000446349 DCAF8L2P0C7V8 631 aa14.76□□□□□ -0.05
PTPN3-204ENST00000446349 NISCHQ9Y2I1 1504 aa14.51□□□□□ -0.09
PTPN3-204ENST00000446349 FAM9AQ8IZU1 332 aaPredicted RBP13.89□□□□□ -0.19
PTPN3-204ENST00000446349 SUPT5HO00267 1087 aaKnown RBP13.7□□□□□ -0.22
PTPN3-204ENST00000446349 APLP2Q06481 763 aa13.56□□□□□ -0.24
PTPN3-204ENST00000446349 SHROOM4Q9ULL8 1493 aa13.46□□□□□ -0.26
PTPN3-204ENST00000446349 PELP1Q8IZL8 1130 aaKnown RBP13.38□□□□□ -0.27
PTPN3-204ENST00000446349 EHMT2Q96KQ7 1210 aa12.97□□□□□ -0.33
PTPN3-204ENST00000446349 TRIM41Q8WV44 630 aa12.97□□□□□ -0.33
PTPN3-204ENST00000446349 ZEB1P37275 1124 aaPredicted RBP12.9□□□□□ -0.34
PTPN3-204ENST00000446349 ATP1B4Q9UN42 357 aaPredicted RBP12.87□□□□□ -0.35
PTPN3-204ENST00000446349 UBTFP17480 764 aaKnown RBP12.85□□□□□ -0.35
PTPN3-204ENST00000446349 CCER1Q8TC90 406 aaPredicted RBP12.8□□□□□ -0.36
PTPN3-204ENST00000446349 RANGAP1P46060 587 aaPredicted RBP12.67□□□□□ -0.38
PTPN3-204ENST00000446349 CENPBP07199 599 aaPredicted RBP12.65□□□□□ -0.38
PTPN3-204ENST00000446349 MYT1LQ9UL68 1186 aa12.63□□□□□ -0.39
PTPN3-204ENST00000446349 PCGF6Q9BYE7 350 aa12.59□□□□□ -0.39
PTPN3-204ENST00000446349 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.57□□□□□ -0.4
PTPN3-204ENST00000446349 HNRNPUL2Q1KMD3 747 aaKnown RBP12.57□□□□□ -0.4
PTPN3-204ENST00000446349 TTBK1Q5TCY1 1321 aaPredicted RBP12.56□□□□□ -0.4
PTPN3-204ENST00000446349 NEFLP07196 543 aa12.52□□□□□ -0.4
PTPN3-204ENST00000446349 ABCC9O60706 1549 aa12.52□□□□□ -0.41
PTPN3-204ENST00000446349 ERICH6Q7L0X2 663 aa12.51□□□□□ -0.41
PTPN3-204ENST00000446349 CCDC180Q9P1Z9 1646 aa12.39□□□□□ -0.43
PTPN3-204ENST00000446349 MYT1Q01538 1121 aa12.38□□□□□ -0.43
PTPN3-204ENST00000446349 TRIM26Q12899 539 aaPredicted RBP12.33□□□□□ -0.44
PTPN3-204ENST00000446349 PABPN1Q86U42 306 aaKnown RBP eCLIP12.25□□□□□ -0.45
PTPN3-204ENST00000446349 DAXXQ9UER7 740 aaPredicted RBP12.22□□□□□ -0.45
PTPN3-204ENST00000446349 ITGAEP38570 1179 aa12.18□□□□□ -0.46
PTPN3-204ENST00000446349 CDK11AQ9UQ88 783 aaPredicted RBP12.17□□□□□ -0.46
PTPN3-204ENST00000446349 SLC4A1APQ9BWU0 796 aaKnown RBP12.14□□□□□ -0.47
PTPN3-204ENST00000446349 RB1CC1Q8TDY2 1594 aa12.14□□□□□ -0.47
PTPN3-204ENST00000446349 POLR3GLQ9BT43 218 aa12.14□□□□□ -0.47
PTPN3-204ENST00000446349 FBLN2P98095 1184 aa12.11□□□□□ -0.47
PTPN3-204ENST00000446349 FAM50AQ14320 339 aaKnown RBP12.09□□□□□ -0.47
PTPN3-204ENST00000446349 NPM1P06748 294 aaKnown RBP eCLIP12.08□□□□□ -0.48
PTPN3-204ENST00000446349 CHIC1Q5VXU3 224 aa12.08□□□□□ -0.48
PTPN3-204ENST00000446349 ESF1Q9H501 851 aaKnown RBP12.07□□□□□ -0.48
PTPN3-204ENST00000446349 TRIM52Q96A61 297 aa12.07□□□□□ -0.48
PTPN3-204ENST00000446349 YTHDC1Q96MU7 727 aaKnown RBP12.06□□□□□ -0.48
PTPN3-204ENST00000446349 SCRIBQ14160 1630 aa12.04□□□□□ -0.48
PTPN3-204ENST00000446349 NEFMP07197 916 aa12.04□□□□□ -0.48
PTPN3-204ENST00000446349 NACADO15069 1562 aa12□□□□□ -0.49
PTPN3-204ENST00000446349 ZBTB47Q9UFB7 747 aaPredicted RBP11.98□□□□□ -0.49
PTPN3-204ENST00000446349 ACIN1Q9UKV3 1341 aaKnown RBP11.98□□□□□ -0.49
PTPN3-204ENST00000446349 PPARGC1BQ86YN6 1023 aaKnown RBP11.98□□□□□ -0.49
PTPN3-204ENST00000446349 ZCCHC6Q5VYS8 1495 aaKnown RBP11.97□□□□□ -0.49
PTPN3-204ENST00000446349 BCANQ96GW7 911 aa11.95□□□□□ -0.5
PTPN3-204ENST00000446349 CLSPNQ9HAW4 1339 aa11.9□□□□□ -0.5
PTPN3-204ENST00000446349 CSRNP3Q8WYN3 585 aa11.89□□□□□ -0.51
PTPN3-204ENST00000446349 LOC105371045A0A1W2PR82 267 aa11.87□□□□□ -0.51
PTPN3-204ENST00000446349 ZNF316A6NFI3 1004 aaPredicted RBP11.85□□□□□ -0.51
PTPN3-204ENST00000446349 HRCP23327 699 aa11.85□□□□□ -0.51
PTPN3-204ENST00000446349 STAG3Q9UJ98 1225 aa11.85□□□□□ -0.51
PTPN3-204ENST00000446349 ANP32CO43423 234 aa11.84□□□□□ -0.51
PTPN3-204ENST00000446349 CHMP7Q8WUX9 453 aaPredicted RBP11.78□□□□□ -0.52
PTPN3-204ENST00000446349 NEUROD1Q13562 356 aa11.78□□□□□ -0.52
PTPN3-204ENST00000446349 ZNF777Q9ULD5 760 aaPredicted RBP11.76□□□□□ -0.53
PTPN3-204ENST00000446349 ZNF326Q5BKZ1 582 aaKnown RBP11.76□□□□□ -0.53
PTPN3-204ENST00000446349 EEA1Q15075 1411 aa11.75□□□□□ -0.53
PTPN3-204ENST00000446349 TSPY4P0CV99 314 aa11.73□□□□□ -0.53
PTPN3-204ENST00000446349 TSPY10P0CW01 314 aa11.73□□□□□ -0.53
PTPN3-204ENST00000446349 CANXP27824 592 aaKnown RBP11.73□□□□□ -0.53
PTPN3-204ENST00000446349 CNGB1Q14028 1251 aaPredicted RBP11.73□□□□□ -0.53
PTPN3-204ENST00000446349 SLC24A1O60721 1099 aa11.72□□□□□ -0.53
PTPN3-204ENST00000446349 DIEXFQ68CQ4 756 aaKnown RBP11.72□□□□□ -0.53
PTPN3-204ENST00000446349 RTL5Q5HYW3 569 aaPredicted RBP11.72□□□□□ -0.53
PTPN3-204ENST00000446349 RSF1Q96T23 1441 aaPredicted RBP11.71□□□□□ -0.53
PTPN3-204ENST00000446349 BAZ1BQ9UIG0 1483 aaKnown RBP11.7□□□□□ -0.54
PTPN3-204ENST00000446349 P3H3Q8IVL6 736 aa11.69□□□□□ -0.54
PTPN3-204ENST00000446349 ERCC6Q03468 1493 aa11.68□□□□□ -0.54
PTPN3-204ENST00000446349 TONSLQ96HA7 1378 aa11.67□□□□□ -0.54
PTPN3-204ENST00000446349 DCAF1Q9Y4B6 1507 aa11.66□□□□□ -0.54
PTPN3-204ENST00000446349 MTUS2Q5JR59 1369 aa11.65□□□□□ -0.54
PTPN3-204ENST00000446349 CHGAP10645 457 aaKnown RBP11.64□□□□□ -0.55
PTPN3-204ENST00000446349 BAZ1AQ9NRL2 1556 aaPredicted RBP11.63□□□□□ -0.55
PTPN3-204ENST00000446349 PLEKHD1A6NEE1 506 aa11.6□□□□□ -0.55
PTPN3-204ENST00000446349 KIF27Q86VH2 1401 aa11.58□□□□□ -0.56
PTPN3-204ENST00000446349 ARID3CA6NKF2 412 aa11.58□□□□□ -0.56
PTPN3-204ENST00000446349 NPM2Q86SE8 214 aaKnown RBP11.56□□□□□ -0.56
PTPN3-204ENST00000446349 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.54□□□□□ -0.56
PTPN3-204ENST00000446349 GOLGA3Q08378 1498 aa11.54□□□□□ -0.56
PTPN3-204ENST00000446349 CDCA8Q53HL2 280 aa11.53□□□□□ -0.56
PTPN3-204ENST00000446349 SMARCA2P51531 1590 aa11.53□□□□□ -0.56
PTPN3-204ENST00000446349 PPP1R15AO75807 674 aaPredicted RBP11.52□□□□□ -0.57
PTPN3-204ENST00000446349 UPF2Q9HAU5 1272 aaKnown RBP11.51□□□□□ -0.57
PTPN3-204ENST00000446349 HDGFP51858 240 aaKnown RBP11.5□□□□□ -0.57
PTPN3-204ENST00000446349 CLIP1P30622 1438 aa11.49□□□□□ -0.57
PTPN3-204ENST00000446349 EIF5BO60841 1220 aaKnown RBP11.49□□□□□ -0.57
PTPN3-204ENST00000446349 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.49□□□□□ -0.574e-6■□□□□ 11.1
PTPN3-204ENST00000446349 WRNQ14191 1432 aaPredicted RBP eCLIP11.48□□□□□ -0.57
PTPN3-204ENST00000446349 CEP164Q9UPV0 1460 aa11.47□□□□□ -0.57
PTPN3-204ENST00000446349 PDS5BQ9NTI5 1447 aa11.47□□□□□ -0.57
PTPN3-204ENST00000446349 FHAD1B1AJZ9 1412 aa11.46□□□□□ -0.57
PTPN3-204ENST00000446349 WDR43Q15061 677 aaKnown RBP eCLIP11.46□□□□□ -0.57
PTPN3-204ENST00000446349 ARID4BQ4LE39 1312 aaPredicted RBP11.45□□□□□ -0.58
PTPN3-204ENST00000446349 PLPPR3Q6T4P5 718 aa11.44□□□□□ -0.58
PTPN3-204ENST00000446349 C14orf37Q86TY3 774 aa11.44□□□□□ -0.58
PTPN3-204ENST00000446349 ANP32BQ92688 251 aaKnown RBP11.43□□□□□ -0.58
PTPN3-204ENST00000446349 KANK1Q14678 1352 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms