Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ZNF718-201ENST00000510175 3495 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL8A1P27658 XRCC6P2-201ENST00000457831 1822 ntBASIC6.36□□□□□ -1.39
COL8A1P27658 GPM6B-201ENST00000316715 3275 ntAPPRIS ALT1 TSL 2 BASIC6.36□□□□□ -1.39
COL8A1P27658 DRP2-204ENST00000538510 6852 ntAPPRIS P3 TSL 2 BASIC6.36□□□□□ -1.39
COL8A1P27658 GDPD4-201ENST00000315938 2533 ntAPPRIS P2 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL8A1P27658 NQO1-203ENST00000379047 2527 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL8A1P27658 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL8A1P27658 ZNF235-201ENST00000291182 3188 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL8A1P27658 FUT10-206ENST00000518672 3115 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL8A1P27658 ARPP21-207ENST00000417925 3086 ntTSL 2 BASIC6.36□□□□□ -1.39
COL8A1P27658 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL8A1P27658 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC6.36□□□□□ -1.39
COL8A1P27658 ZNF438-208ENST00000538351 3284 ntAPPRIS ALT2 TSL 2 BASIC6.35□□□□□ -1.39
COL8A1P27658 TMEM217-202ENST00000356757 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL8A1P27658 IAPP-205ENST00000542023 2015 ntTSL 2 BASIC6.35□□□□□ -1.39
COL8A1P27658 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC6.35□□□□□ -1.39
COL8A1P27658 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL8A1P27658 ADGRG7-201ENST00000273352 3140 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL8A1P27658 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL8A1P27658 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL8A1P27658 ALG13-224ENST00000610588 4175 ntTSL 2 BASIC6.35□□□□□ -1.39
COL8A1P27658 VMA21-201ENST00000330374 4717 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL8A1P27658 SNX16-202ENST00000353788 3032 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL8A1P27658 AGBL4-203ENST00000371838 1353 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
COL8A1P27658 HSP90AB7P-201ENST00000450068 2454 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC6.35□□□□□ -1.39
COL8A1P27658 AC107419.1-201ENST00000422048 1879 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL8A1P27658 NACA-216ENST00000550952 2922 ntTSL 2 BASIC6.35□□□□□ -1.39
COL8A1P27658 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
COL8A1P27658 MLIP-201ENST00000274897 1815 ntAPPRIS P3 TSL 2 BASIC6.35□□□□□ -1.39
COL8A1P27658 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL8A1P27658 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL8A1P27658 OR11H13P-201ENST00000359695 979 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 RN7SKP6-201ENST00000364795 319 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 RNU1-55P-201ENST00000365510 158 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 SSX3-202ENST00000376893 800 ntTSL 2 BASIC6.35□□□□□ -1.39
COL8A1P27658 TRBV6-7-201ENST00000390373 344 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
COL8A1P27658 SMIM2-201ENST00000400419 822 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL8A1P27658 MRPL42P3-201ENST00000401492 326 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 MORN2-203ENST00000409131 544 ntTSL 5 BASIC6.35□□□□□ -1.39
COL8A1P27658 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC6.35□□□□□ -1.39
COL8A1P27658 AC083875.1-201ENST00000419509 405 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 DAZAP2-202ENST00000425012 1117 ntTSL 2 BASIC6.35□□□□□ -1.39
COL8A1P27658 RPSAP40-201ENST00000442343 891 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 AC138207.1-201ENST00000442757 545 ntTSL 3 BASIC6.35□□□□□ -1.39
COL8A1P27658 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC6.35□□□□□ -1.39
COL8A1P27658 AL031736.1-201ENST00000449688 618 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 AL645937.3-201ENST00000453647 936 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC6.35□□□□□ -1.39
COL8A1P27658 RPL38P4-201ENST00000502376 214 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 SUMO2P17-201ENST00000504438 285 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 AC008496.1-201ENST00000509131 295 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC6.35□□□□□ -1.39
COL8A1P27658 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC6.35□□□□□ -1.39
COL8A1P27658 AC008429.4-201ENST00000521201 182 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL8A1P27658 PSMA2P1-201ENST00000526365 646 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL8A1P27658 MAL2-203ENST00000534619 578 ntTSL 4 BASIC6.35□□□□□ -1.39
COL8A1P27658 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC6.35□□□□□ -1.39
COL8A1P27658 AC018558.5-201ENST00000565840 952 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 AC141257.3-201ENST00000572906 215 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 MIR378C-201ENST00000578683 81 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 AC073539.2-201ENST00000597113 165 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 MTCO2P22-201ENST00000603246 681 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 RPS4XP21-201ENST00000603814 750 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 AL359999.1-201ENST00000604513 294 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 AL592436.1-201ENST00000605135 558 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 MIR98-201ENST00000606724 119 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 AL008723.3-201ENST00000608926 449 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 AC078899.5-201ENST00000612475 178 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 MILR1-202ENST00000612535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL8A1P27658 AL355810.1-201ENST00000614629 552 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 AC009318.4-201ENST00000620496 486 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 AC005858.3-201ENST00000624756 589 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 AC069542.2-201ENST00000624816 216 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 AC005618.4-201ENST00000625053 554 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 MMP10-201ENST00000279441 1758 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL8A1P27658 EBF1-203ENST00000517373 2277 ntTSL 5 BASIC6.35□□□□□ -1.39
COL8A1P27658 ZNF544-216ENST00000600044 2784 ntAPPRIS ALT2 TSL 4 BASIC6.35□□□□□ -1.39
COL8A1P27658 CDH17-202ENST00000441892 2204 ntTSL 2 BASIC6.35□□□□□ -1.39
COL8A1P27658 AC013562.1-201ENST00000519427 1722 ntTSL 2 BASIC6.35□□□□□ -1.39
COL8A1P27658 HSPD1P4-201ENST00000547203 1702 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 MAPK10-280ENST00000641166 2684 ntAPPRIS ALT1 BASIC6.35□□□□□ -1.39
COL8A1P27658 CFI-201ENST00000394634 2159 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL8A1P27658 AC007485.2-201ENST00000623493 1667 ntBASIC6.35□□□□□ -1.39
COL8A1P27658 CACNB4-219ENST00000636108 1698 ntTSL 5 BASIC6.35□□□□□ -1.39
COL8A1P27658 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
COL8A1P27658 DIO2-210ENST00000557010 6367 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
COL8A1P27658 CYP4A11-201ENST00000310638 2530 ntAPPRIS P2 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL8A1P27658 RBMXL1-201ENST00000321792 4799 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL8A1P27658 MID1-205ENST00000380785 6092 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
COL8A1P27658 MGAM-209ENST00000620571 6483 ntTSL 5 BASIC6.35□□□□□ -1.39
COL8A1P27658 KLHL2-209ENST00000514860 2442 ntAPPRIS ALT2 TSL 2 BASIC6.35□□□□□ -1.39
COL8A1P27658 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL8A1P27658 MTFR2-205ENST00000451457 1524 ntAPPRIS P2 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL8A1P27658 NUP155-207ENST00000513532 4088 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL8A1P27658 TBX5-202ENST00000349716 3585 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
COL8A1P27658 HDAC1P1-201ENST00000455482 1445 ntBASIC6.34□□□□□ -1.39
COL8A1P27658 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC6.34□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms