Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
CUX1P39880 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC7.67□□□□□ -1.18
CUX1P39880 AC090181.2-201ENST00000602975 672 ntBASIC7.67□□□□□ -1.18
CUX1P39880 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC7.67□□□□□ -1.18
CUX1P39880 LGI1-209ENST00000627699 664 ntTSL 3 BASIC7.67□□□□□ -1.18
CUX1P39880 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
CUX1P39880 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
CUX1P39880 AC108467.2-201ENST00000617640 1597 ntBASIC7.66□□□□□ -1.18
CUX1P39880 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC7.66□□□□□ -1.18
CUX1P39880 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC7.66□□□□□ -1.18
CUX1P39880 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC7.66□□□□□ -1.18
CUX1P39880 AC239868.2-201ENST00000564237 4527 ntBASIC7.66□□□□□ -1.18
CUX1P39880 AC008549.2-201ENST00000333482 706 ntBASIC7.66□□□□□ -1.18
CUX1P39880 HYKK-202ENST00000408962 847 ntTSL 5 BASIC7.66□□□□□ -1.18
CUX1P39880 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC7.66□□□□□ -1.18
CUX1P39880 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC7.66□□□□□ -1.18
CUX1P39880 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC7.66□□□□□ -1.18
CUX1P39880 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC7.66□□□□□ -1.18
CUX1P39880 AC090515.3-201ENST00000560431 315 ntBASIC7.66□□□□□ -1.18
CUX1P39880 HYKK-203ENST00000563233 734 ntTSL 2 BASIC7.66□□□□□ -1.18
CUX1P39880 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC7.66□□□□□ -1.18
CUX1P39880 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC7.66□□□□□ -1.18
CUX1P39880 AC113403.1-201ENST00000604910 193 ntBASIC7.66□□□□□ -1.18
CUX1P39880 AC006133.1-201ENST00000617106 264 ntBASIC7.66□□□□□ -1.18
CUX1P39880 DLEU1_1.1-201ENST00000618107 190 ntBASIC7.66□□□□□ -1.18
CUX1P39880 AC140479.6-201ENST00000633535 357 ntBASIC7.66□□□□□ -1.18
CUX1P39880 AL139254.3-201ENST00000641097 674 ntBASIC7.66□□□□□ -1.18
CUX1P39880 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
CUX1P39880 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
CUX1P39880 AC005261.4-201ENST00000600047 1385 ntBASIC7.65□□□□□ -1.18
CUX1P39880 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC7.65□□□□□ -1.18
CUX1P39880 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
CUX1P39880 SNORA11C-201ENST00000408532 129 ntBASIC7.65□□□□□ -1.18
CUX1P39880 AC011998.1-201ENST00000433403 117 ntBASIC7.65□□□□□ -1.18
CUX1P39880 ISCUP1-201ENST00000454451 448 ntBASIC7.65□□□□□ -1.18
CUX1P39880 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
CUX1P39880 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC7.65□□□□□ -1.18
CUX1P39880 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC7.65□□□□□ -1.18
CUX1P39880 RNA5SP143-201ENST00000516936 115 ntBASIC7.65□□□□□ -1.18
CUX1P39880 MIR2116-201ENST00000517221 80 ntBASIC7.65□□□□□ -1.18
CUX1P39880 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC7.65□□□□□ -1.18
CUX1P39880 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC7.65□□□□□ -1.18
CUX1P39880 AC099676.1-201ENST00000608886 657 ntBASIC7.65□□□□□ -1.18
CUX1P39880 AC034229.5-201ENST00000624258 185 ntBASIC7.65□□□□□ -1.18
CUX1P39880 AC090506.2-201ENST00000624521 419 ntBASIC7.65□□□□□ -1.18
CUX1P39880 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC7.65□□□□□ -1.19
CUX1P39880 BMPR1APS1-201ENST00000403332 1598 ntBASIC7.65□□□□□ -1.19
CUX1P39880 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC7.65□□□□□ -1.19
CUX1P39880 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC7.65□□□□□ -1.19
CUX1P39880 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
CUX1P39880 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC7.64□□□□□ -1.19
CUX1P39880 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
CUX1P39880 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC7.64□□□□□ -1.19
CUX1P39880 AL391684.1-202ENST00000641293 1636 ntBASIC7.64□□□□□ -1.19
CUX1P39880 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC7.64□□□□□ -1.19
CUX1P39880 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC7.64□□□□□ -1.19
CUX1P39880 Z98745.1-201ENST00000402553 494 ntBASIC7.64□□□□□ -1.19
CUX1P39880 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
CUX1P39880 AC021660.1-201ENST00000465006 554 ntBASIC7.64□□□□□ -1.19
CUX1P39880 AC098799.3-201ENST00000506095 438 ntBASIC7.64□□□□□ -1.19
CUX1P39880 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC7.64□□□□□ -1.19
CUX1P39880 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC7.64□□□□□ -1.19
CUX1P39880 AC015912.2-201ENST00000571053 181 ntBASIC7.64□□□□□ -1.19
CUX1P39880 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC7.64□□□□□ -1.19
CUX1P39880 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC7.64□□□□□ -1.19
CUX1P39880 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC7.64□□□□□ -1.19
CUX1P39880 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC7.64□□□□□ -1.19
CUX1P39880 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
CUX1P39880 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
CUX1P39880 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
CUX1P39880 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC7.63□□□□□ -1.19
CUX1P39880 WAC-209ENST00000428935 1320 ntTSL 2 BASIC7.63□□□□□ -1.19
CUX1P39880 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC7.63□□□□□ -1.19
CUX1P39880 MUC4-209ENST00000463781 17110 ntAPPRIS ALT2 TSL 5 BASIC7.63□□□□□ -1.19
CUX1P39880 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC7.63□□□□□ -1.19
CUX1P39880 UBBP2-201ENST00000376781 231 ntBASIC7.63□□□□□ -1.19
CUX1P39880 NRBF2P2-201ENST00000413087 861 ntBASIC7.63□□□□□ -1.19
CUX1P39880 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC7.63□□□□□ -1.19
CUX1P39880 TRIM36-IT1-201ENST00000503723 881 ntBASIC7.63□□□□□ -1.19
CUX1P39880 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC7.63□□□□□ -1.19
CUX1P39880 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC7.63□□□□□ -1.19
CUX1P39880 RN7SL600P-201ENST00000581811 299 ntBASIC7.63□□□□□ -1.19
CUX1P39880 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC7.63□□□□□ -1.19
CUX1P39880 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC7.63□□□□□ -1.19
CUX1P39880 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC7.63□□□□□ -1.19
CUX1P39880 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC7.63□□□□□ -1.19
CUX1P39880 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
CUX1P39880 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC7.63□□□□□ -1.19
CUX1P39880 CARF-208ENST00000428585 2513 ntTSL 2 BASIC7.63□□□□□ -1.19
CUX1P39880 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC7.63□□□□□ -1.19
CUX1P39880 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
CUX1P39880 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC7.63□□□□□ -1.19
CUX1P39880 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC7.63□□□□□ -1.19
CUX1P39880 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
CUX1P39880 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC7.63□□□□□ -1.19
CUX1P39880 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
CUX1P39880 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC7.62□□□□□ -1.19
CUX1P39880 RNU1-85P-201ENST00000364127 164 ntBASIC7.62□□□□□ -1.19
CUX1P39880 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC7.62□□□□□ -1.19
CUX1P39880 RRM2P4-201ENST00000441721 562 ntBASIC7.62□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms