RNA–Protein interactions for RNA: ENST00000512476.1

TRAPPC11-209, Transcript of trafficking protein particle complex 11, humanhuman

TSL 1 (best) BASIC

Gene TRAPPC11, Length 2,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC11-209ENST00000512476 CHIC1Q5VXU3 224 aa14.11□□□□□ -0.15
TRAPPC11-209ENST00000512476 SLC24A1O60721 1099 aa13.9□□□□□ -0.18
TRAPPC11-209ENST00000512476 AEBP2Q6ZN18 517 aaPredicted RBP13.44□□□□□ -0.26
TRAPPC11-209ENST00000512476 EHMT2Q96KQ7 1210 aa13.42□□□□□ -0.26
TRAPPC11-209ENST00000512476 PLPPR3Q6T4P5 718 aa13.05□□□□□ -0.32
TRAPPC11-209ENST00000512476 PHF23Q9BUL5 403 aaPredicted RBP12.87□□□□□ -0.35
TRAPPC11-209ENST00000512476 RTN4Q9NQC3 1192 aaKnown RBP12.82□□□□□ -0.36
TRAPPC11-209ENST00000512476 CSRNP3Q8WYN3 585 aa12.52□□□□□ -0.41
TRAPPC11-209ENST00000512476 KCNA4P22459 653 aa12.5□□□□□ -0.41
TRAPPC11-209ENST00000512476 NCBP3Q53F19 620 aaKnown RBP12.35□□□□□ -0.43
TRAPPC11-209ENST00000512476 DAXXQ9UER7 740 aaPredicted RBP12.32□□□□□ -0.44
TRAPPC11-209ENST00000512476 AMER1Q5JTC6 1135 aaPredicted RBP12.31□□□□□ -0.44
TRAPPC11-209ENST00000512476 PRKCSHP14314 528 aaPredicted RBP12.26□□□□□ -0.45
TRAPPC11-209ENST00000512476 TIMELESSQ9UNS1 1208 aa11.88□□□□□ -0.51
TRAPPC11-209ENST00000512476 SLC4A1APQ9BWU0 796 aaKnown RBP11.84□□□□□ -0.51
TRAPPC11-209ENST00000512476 TAOK2Q9UL54 1235 aa11.73□□□□□ -0.53
TRAPPC11-209ENST00000512476 ARXQ96QS3 562 aa11.68□□□□□ -0.54
TRAPPC11-209ENST00000512476 TULP1O00294 542 aaPredicted RBP11.67□□□□□ -0.54
TRAPPC11-209ENST00000512476 ADRA2BP18089 450 aa11.67□□□□□ -0.54
TRAPPC11-209ENST00000512476 ZBTB22O15209 634 aa11.59□□□□□ -0.55
TRAPPC11-209ENST00000512476 TPRNQ4KMQ1 711 aa11.56□□□□□ -0.56
TRAPPC11-209ENST00000512476 BCANQ96GW7 911 aa11.49□□□□□ -0.57
TRAPPC11-209ENST00000512476 APLP2Q06481 763 aa11.45□□□□□ -0.58
TRAPPC11-209ENST00000512476 PLCB2Q00722 1185 aa11.44□□□□□ -0.58
TRAPPC11-209ENST00000512476 HOMEZQ8IX15 550 aa11.33□□□□□ -0.6
TRAPPC11-209ENST00000512476 HAP1P54257 671 aaPredicted RBP11.33□□□□□ -0.6
TRAPPC11-209ENST00000512476 KLHL34Q8N239 644 aa11.31□□□□□ -0.6
TRAPPC11-209ENST00000512476 GTF3C3Q9Y5Q9 886 aa11.26□□□□□ -0.61
TRAPPC11-209ENST00000512476 PODXL2Q9NZ53 605 aa11.23□□□□□ -0.61
TRAPPC11-209ENST00000512476 RANGAP1P46060 587 aaPredicted RBP11.2□□□□□ -0.62
TRAPPC11-209ENST00000512476 FKBP8Q14318 412 aa11.15□□□□□ -0.62
TRAPPC11-209ENST00000512476 NPM3O75607 178 aaKnown RBP11.15□□□□□ -0.62
TRAPPC11-209ENST00000512476 PELP1Q8IZL8 1130 aaKnown RBP11.12□□□□□ -0.63
TRAPPC11-209ENST00000512476 ERICH6Q7L0X2 663 aa11.08□□□□□ -0.64
TRAPPC11-209ENST00000512476 KDM2AQ9Y2K7 1162 aa11.08□□□□□ -0.64
TRAPPC11-209ENST00000512476 TTBK1Q5TCY1 1321 aaPredicted RBP11.06□□□□□ -0.64
TRAPPC11-209ENST00000512476 FBLN2P98095 1184 aa11.02□□□□□ -0.65
TRAPPC11-209ENST00000512476 PPP6R1Q9UPN7 881 aa11.01□□□□□ -0.65
TRAPPC11-209ENST00000512476 TMEM132AQ24JP5 1023 aa11.01□□□□□ -0.65
TRAPPC11-209ENST00000512476 VSIG10Q8N0Z9 540 aa10.96□□□□□ -0.65
TRAPPC11-209ENST00000512476 NPM2Q86SE8 214 aaKnown RBP10.89□□□□□ -0.67
TRAPPC11-209ENST00000512476 C14orf37Q86TY3 774 aa10.89□□□□□ -0.67
TRAPPC11-209ENST00000512476 SUPT5HO00267 1087 aaKnown RBP10.86□□□□□ -0.67
TRAPPC11-209ENST00000512476 PPP4R3CPQ6ZMV5 832 aa10.85□□□□□ -0.67
TRAPPC11-209ENST00000512476 TRIM26Q12899 539 aaPredicted RBP10.85□□□□□ -0.67
TRAPPC11-209ENST00000512476 MYT1Q01538 1121 aa10.82□□□□□ -0.68
TRAPPC11-209ENST00000512476 SENP3Q9H4L4 574 aaPredicted RBP10.81□□□□□ -0.68
TRAPPC11-209ENST00000512476 EIF5BO60841 1220 aaKnown RBP10.77□□□□□ -0.69
TRAPPC11-209ENST00000512476 DCAF8L2P0C7V8 631 aa10.77□□□□□ -0.69
TRAPPC11-209ENST00000512476 UBTFP17480 764 aaKnown RBP10.77□□□□□ -0.69
TRAPPC11-209ENST00000512476 HRCP23327 699 aa10.74□□□□□ -0.69
TRAPPC11-209ENST00000512476 FOXD4L1Q9NU39 408 aa10.71□□□□□ -0.69
TRAPPC11-209ENST00000512476 LOC105371045A0A1W2PR82 267 aa10.65□□□□□ -0.7
TRAPPC11-209ENST00000512476 NISCHQ9Y2I1 1504 aa10.61□□□□□ -0.71
TRAPPC11-209ENST00000512476 PLEKHG5O94827 1062 aa10.61□□□□□ -0.71
TRAPPC11-209ENST00000512476 FBXO3Q9UK99 471 aa10.58□□□□□ -0.72
TRAPPC11-209ENST00000512476 TSHZ2Q9NRE2 1034 aa10.53□□□□□ -0.72
TRAPPC11-209ENST00000512476 PAXIP1Q6ZW49 1069 aaPredicted RBP10.52□□□□□ -0.73
TRAPPC11-209ENST00000512476 CFAP44Q96MT7 982 aa10.5□□□□□ -0.73
TRAPPC11-209ENST00000512476 NPM1P06748 294 aaKnown RBP eCLIP10.46□□□□□ -0.73
TRAPPC11-209ENST00000512476 PKD2Q13563 968 aa10.42□□□□□ -0.74
TRAPPC11-209ENST00000512476 TRHP20396 242 aaPredicted RBP10.41□□□□□ -0.74
TRAPPC11-209ENST00000512476 NBR1Q14596 966 aa10.4□□□□□ -0.75
TRAPPC11-209ENST00000512476 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.3□□□□□ -0.76
TRAPPC11-209ENST00000512476 IGSF3O75054 1194 aa10.29□□□□□ -0.76
TRAPPC11-209ENST00000512476 BBXQ8WY36 941 aaPredicted RBP10.28□□□□□ -0.76
TRAPPC11-209ENST00000512476 IFNLR1Q8IU57 520 aaPredicted RBP10.23□□□□□ -0.77
TRAPPC11-209ENST00000512476 ARID3AQ99856 593 aa10.23□□□□□ -0.77
TRAPPC11-209ENST00000512476 FOXD1Q16676 465 aa10.18□□□□□ -0.78
TRAPPC11-209ENST00000512476 NECTIN2Q92692 538 aa10.17□□□□□ -0.78
TRAPPC11-209ENST00000512476 CHMP4AQ9BY43 222 aa10.17□□□□□ -0.78
TRAPPC11-209ENST00000512476 BRPF1P55201 1214 aaPredicted RBP10.16□□□□□ -0.78
TRAPPC11-209ENST00000512476 DNAJC5Q9H3Z4 198 aa10.16□□□□□ -0.78
TRAPPC11-209ENST00000512476 SPRYD3Q8NCJ5 442 aa10.14□□□□□ -0.79
TRAPPC11-209ENST00000512476 C1orf115Q9H7X2 142 aa10.13□□□□□ -0.79
TRAPPC11-209ENST00000512476 SAMD1Q6SPF0 538 aaPredicted RBP10.1□□□□□ -0.79
TRAPPC11-209ENST00000512476 CCDC9Q9Y3X0 531 aaKnown RBP10.09□□□□□ -0.79
TRAPPC11-209ENST00000512476 VASPP50552 380 aaPredicted RBP10.08□□□□□ -0.8
TRAPPC11-209ENST00000512476 CNKSR2Q8WXI2 1034 aa10.07□□□□□ -0.8
TRAPPC11-209ENST00000512476 SLC4A2P04920 1241 aa10.06□□□□□ -0.8
TRAPPC11-209ENST00000512476 DHX37Q8IY37 1157 aaKnown RBP10.02□□□□□ -0.8
TRAPPC11-209ENST00000512476 SHROOM4Q9ULL8 1493 aa10.02□□□□□ -0.81
TRAPPC11-209ENST00000512476 CDK11BP21127 795 aaKnown RBP10.01□□□□□ -0.81
TRAPPC11-209ENST00000512476 CDK11AQ9UQ88 783 aaPredicted RBP10.01□□□□□ -0.81
TRAPPC11-209ENST00000512476 PDIA4P13667 645 aaKnown RBP10□□□□□ -0.81
TRAPPC11-209ENST00000512476 ZNF428Q96B54 188 aa10□□□□□ -0.81
TRAPPC11-209ENST00000512476 RGL2O15211 777 aa9.99□□□□□ -0.81
TRAPPC11-209ENST00000512476 ATXN8OSP0DMR3 200 aa9.98□□□□□ -0.81
TRAPPC11-209ENST00000512476 ARID3CA6NKF2 412 aa9.97□□□□□ -0.81
TRAPPC11-209ENST00000512476 ZBTB7CA1YPR0 619 aa9.94□□□□□ -0.82
TRAPPC11-209ENST00000512476 MAPK8IP2Q13387 824 aaPredicted RBP9.94□□□□□ -0.82
TRAPPC11-209ENST00000512476 DNAJC5BQ9UF47 199 aa9.94□□□□□ -0.82
TRAPPC11-209ENST00000512476 ZMYND15Q9H091 742 aa9.93□□□□□ -0.82
TRAPPC11-209ENST00000512476 ECM2O94769 699 aaPredicted RBP9.92□□□□□ -0.82
TRAPPC11-209ENST00000512476 ATF5Q9Y2D1 282 aaPredicted RBP9.92□□□□□ -0.82
TRAPPC11-209ENST00000512476 NEUROD2Q15784 382 aa9.9□□□□□ -0.82
TRAPPC11-209ENST00000512476 RSPH6AQ9H0K4 717 aa9.89□□□□□ -0.83
TRAPPC11-209ENST00000512476 HSP90B1P14625 803 aaKnown RBP9.86□□□□□ -0.83
TRAPPC11-209ENST00000512476 CHGAP10645 457 aaKnown RBP9.85□□□□□ -0.83
TRAPPC11-209ENST00000512476 KCTD17Q8N5Z5 321 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms