Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 AC124016.1-201ENST00000609552 612 ntBASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PCDHB3Q9Y5E6 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
PCDHB3Q9Y5E6 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
PCDHB3Q9Y5E6 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
PCDHB3Q9Y5E6 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
PCDHB3Q9Y5E6 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
PCDHB3Q9Y5E6 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
PCDHB3Q9Y5E6 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
PCDHB3Q9Y5E6 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
PCDHB3Q9Y5E6 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
PCDHB3Q9Y5E6 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
PCDHB3Q9Y5E6 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.08■□□□□ 0.65
PCDHB3Q9Y5E6 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.08■□□□□ 0.65
PCDHB3Q9Y5E6 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
PCDHB3Q9Y5E6 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
PCDHB3Q9Y5E6 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
PCDHB3Q9Y5E6 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.08■□□□□ 0.65
PCDHB3Q9Y5E6 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
PCDHB3Q9Y5E6 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PCDHB3Q9Y5E6 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.08■□□□□ 0.64
PCDHB3Q9Y5E6 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PCDHB3Q9Y5E6 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.08■□□□□ 0.64
PCDHB3Q9Y5E6 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.08■□□□□ 0.64
PCDHB3Q9Y5E6 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC19.08■□□□□ 0.64
PCDHB3Q9Y5E6 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
PCDHB3Q9Y5E6 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.08■□□□□ 0.64
PCDHB3Q9Y5E6 AL023875.1-201ENST00000640777 796 ntBASIC19.08■□□□□ 0.64
PCDHB3Q9Y5E6 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
PCDHB3Q9Y5E6 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PCDHB3Q9Y5E6 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PCDHB3Q9Y5E6 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PCDHB3Q9Y5E6 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PCDHB3Q9Y5E6 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PCDHB3Q9Y5E6 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.64
PCDHB3Q9Y5E6 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
PCDHB3Q9Y5E6 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PCDHB3Q9Y5E6 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.07■□□□□ 0.64
PCDHB3Q9Y5E6 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PCDHB3Q9Y5E6 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PCDHB3Q9Y5E6 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PCDHB3Q9Y5E6 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC19.07■□□□□ 0.64
PCDHB3Q9Y5E6 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PCDHB3Q9Y5E6 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PCDHB3Q9Y5E6 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.07■□□□□ 0.64
PCDHB3Q9Y5E6 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC19.07■□□□□ 0.64
PCDHB3Q9Y5E6 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PCDHB3Q9Y5E6 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
PCDHB3Q9Y5E6 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
PCDHB3Q9Y5E6 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.07■□□□□ 0.64
PCDHB3Q9Y5E6 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PCDHB3Q9Y5E6 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.07■□□□□ 0.64
PCDHB3Q9Y5E6 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
PCDHB3Q9Y5E6 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PCDHB3Q9Y5E6 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PCDHB3Q9Y5E6 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.07■□□□□ 0.64
PCDHB3Q9Y5E6 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PCDHB3Q9Y5E6 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 RPS2P55-201ENST00000397318 883 ntBASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 ECEL1P3-201ENST00000427961 737 ntBASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 AC107956.1-201ENST00000494359 873 ntBASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 PRKY-204ENST00000533551 1019 ntBASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 AC233702.5-201ENST00000584107 538 ntBASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 LINC01023-201ENST00000606054 436 ntBASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 AC110285.5-201ENST00000611501 352 ntBASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 AL121829.2-201ENST00000620908 328 ntBASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PCDHB3Q9Y5E6 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms