Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CTDP1Q9Y5B0 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
CTDP1Q9Y5B0 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 CRAT-202ENST00000393384 973 ntTSL 2 BASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 MESTP1-201ENST00000404287 994 ntBASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 AC010947.1-201ENST00000623454 693 ntBASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 HLA-A-209ENST00000638375 975 ntBASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
CTDP1Q9Y5B0 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
CTDP1Q9Y5B0 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
CTDP1Q9Y5B0 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CTDP1Q9Y5B0 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CTDP1Q9Y5B0 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC22.53■■□□□ 1.2
CTDP1Q9Y5B0 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC22.53■■□□□ 1.2
CTDP1Q9Y5B0 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CTDP1Q9Y5B0 AC005521.1-201ENST00000393351 872 ntBASIC22.53■■□□□ 1.2
CTDP1Q9Y5B0 AL137013.1-201ENST00000432946 1228 ntBASIC22.53■■□□□ 1.2
CTDP1Q9Y5B0 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
CTDP1Q9Y5B0 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC22.53■■□□□ 1.2
CTDP1Q9Y5B0 TMA16-209ENST00000513272 803 ntTSL 2 BASIC22.53■■□□□ 1.2
CTDP1Q9Y5B0 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CTDP1Q9Y5B0 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC22.53■■□□□ 1.2
CTDP1Q9Y5B0 AC011298.2-201ENST00000617989 482 ntBASIC22.53■■□□□ 1.2
CTDP1Q9Y5B0 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC22.53■■□□□ 1.2
CTDP1Q9Y5B0 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC22.53■■□□□ 1.2
CTDP1Q9Y5B0 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC22.53■■□□□ 1.2
CTDP1Q9Y5B0 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CTDP1Q9Y5B0 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
CTDP1Q9Y5B0 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC22.52■■□□□ 1.2
CTDP1Q9Y5B0 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC22.52■■□□□ 1.2
CTDP1Q9Y5B0 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CTDP1Q9Y5B0 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC22.52■■□□□ 1.2
CTDP1Q9Y5B0 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CTDP1Q9Y5B0 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CTDP1Q9Y5B0 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CTDP1Q9Y5B0 AL137060.1-201ENST00000618151 2648 ntBASIC22.52■■□□□ 1.2
CTDP1Q9Y5B0 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CTDP1Q9Y5B0 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CTDP1Q9Y5B0 DET1-207ENST00000564406 2315 ntTSL 2 BASIC22.52■■□□□ 1.2
CTDP1Q9Y5B0 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC22.52■■□□□ 1.2
CTDP1Q9Y5B0 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CTDP1Q9Y5B0 AC004951.3-201ENST00000418645 1148 ntBASIC22.52■■□□□ 1.2
CTDP1Q9Y5B0 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CTDP1Q9Y5B0 AC092865.7-201ENST00000641832 219 ntBASIC22.52■■□□□ 1.2
CTDP1Q9Y5B0 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CTDP1Q9Y5B0 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CTDP1Q9Y5B0 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CTDP1Q9Y5B0 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC22.52■■□□□ 1.2
CTDP1Q9Y5B0 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
CTDP1Q9Y5B0 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
CTDP1Q9Y5B0 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC22.52■■□□□ 1.2
CTDP1Q9Y5B0 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CTDP1Q9Y5B0 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
CTDP1Q9Y5B0 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CTDP1Q9Y5B0 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
CTDP1Q9Y5B0 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CTDP1Q9Y5B0 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC22.51■■□□□ 1.19
CTDP1Q9Y5B0 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CTDP1Q9Y5B0 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC22.51■■□□□ 1.19
CTDP1Q9Y5B0 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CTDP1Q9Y5B0 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC22.51■■□□□ 1.19
CTDP1Q9Y5B0 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
CTDP1Q9Y5B0 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CTDP1Q9Y5B0 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CTDP1Q9Y5B0 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CTDP1Q9Y5B0 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC22.51■■□□□ 1.19
CTDP1Q9Y5B0 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CTDP1Q9Y5B0 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
CTDP1Q9Y5B0 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
CTDP1Q9Y5B0 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
CTDP1Q9Y5B0 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC22.51■■□□□ 1.19
CTDP1Q9Y5B0 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC22.51■■□□□ 1.19
CTDP1Q9Y5B0 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CTDP1Q9Y5B0 DUT-205ENST00000558813 769 ntTSL 2 BASIC22.51■■□□□ 1.19
CTDP1Q9Y5B0 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC22.51■■□□□ 1.19
CTDP1Q9Y5B0 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
CTDP1Q9Y5B0 AP005242.2-201ENST00000580065 1175 ntBASIC22.51■■□□□ 1.19
CTDP1Q9Y5B0 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms