Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.07■□□□□ 0.32
RHBDD3Q9Y3P4 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
RHBDD3Q9Y3P4 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC17.07■□□□□ 0.32
RHBDD3Q9Y3P4 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
RHBDD3Q9Y3P4 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RHBDD3Q9Y3P4 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
RHBDD3Q9Y3P4 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.07■□□□□ 0.32
RHBDD3Q9Y3P4 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
RHBDD3Q9Y3P4 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC17.07■□□□□ 0.32
RHBDD3Q9Y3P4 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.07■□□□□ 0.32
RHBDD3Q9Y3P4 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
RHBDD3Q9Y3P4 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
RHBDD3Q9Y3P4 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RHBDD3Q9Y3P4 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
RHBDD3Q9Y3P4 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.06■□□□□ 0.32
RHBDD3Q9Y3P4 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
RHBDD3Q9Y3P4 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RHBDD3Q9Y3P4 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.06■□□□□ 0.32
RHBDD3Q9Y3P4 MFF-205ENST00000354503 1085 ntTSL 2 BASIC17.06■□□□□ 0.32
RHBDD3Q9Y3P4 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RHBDD3Q9Y3P4 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC17.06■□□□□ 0.32
RHBDD3Q9Y3P4 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC17.06■□□□□ 0.32
RHBDD3Q9Y3P4 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC17.06■□□□□ 0.32
RHBDD3Q9Y3P4 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RHBDD3Q9Y3P4 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
RHBDD3Q9Y3P4 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.06■□□□□ 0.32
RHBDD3Q9Y3P4 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RHBDD3Q9Y3P4 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
RHBDD3Q9Y3P4 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.06■□□□□ 0.32
RHBDD3Q9Y3P4 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
RHBDD3Q9Y3P4 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
RHBDD3Q9Y3P4 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC17.06■□□□□ 0.32
RHBDD3Q9Y3P4 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 PFKL-212ENST00000628044 129 ntTSL 3 BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
RHBDD3Q9Y3P4 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 AC091874.3-201ENST00000512672 1195 ntBASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
RHBDD3Q9Y3P4 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
RHBDD3Q9Y3P4 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RHBDD3Q9Y3P4 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC17.03■□□□□ 0.32
RHBDD3Q9Y3P4 CRK-204ENST00000574295 1391 ntTSL 5 BASIC17.03■□□□□ 0.32
RHBDD3Q9Y3P4 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RHBDD3Q9Y3P4 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
RHBDD3Q9Y3P4 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
RHBDD3Q9Y3P4 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RHBDD3Q9Y3P4 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms