Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 GLI3-203ENST00000437480 451 ntTSL 2 BASIC20.52■□□□□ 0.88
SMARCAL1Q9NZC9 AC013268.1-206ENST00000638368 961 ntBASIC20.52■□□□□ 0.88
SMARCAL1Q9NZC9 AC112229.1-201ENST00000639295 961 ntBASIC20.52■□□□□ 0.88
SMARCAL1Q9NZC9 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMARCAL1Q9NZC9 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMARCAL1Q9NZC9 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
SMARCAL1Q9NZC9 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.52■□□□□ 0.88
SMARCAL1Q9NZC9 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
SMARCAL1Q9NZC9 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
SMARCAL1Q9NZC9 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC20.52■□□□□ 0.87
SMARCAL1Q9NZC9 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
SMARCAL1Q9NZC9 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SMARCAL1Q9NZC9 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.52■□□□□ 0.87
SMARCAL1Q9NZC9 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
SMARCAL1Q9NZC9 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.51■□□□□ 0.87
SMARCAL1Q9NZC9 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMARCAL1Q9NZC9 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMARCAL1Q9NZC9 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMARCAL1Q9NZC9 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SMARCAL1Q9NZC9 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMARCAL1Q9NZC9 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMARCAL1Q9NZC9 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMARCAL1Q9NZC9 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMARCAL1Q9NZC9 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.51■□□□□ 0.87
SMARCAL1Q9NZC9 AL162412.1-201ENST00000567129 965 ntBASIC20.51■□□□□ 0.87
SMARCAL1Q9NZC9 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.51■□□□□ 0.87
SMARCAL1Q9NZC9 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.51■□□□□ 0.87
SMARCAL1Q9NZC9 MFSD11-216ENST00000590393 1141 ntBASIC20.51■□□□□ 0.87
SMARCAL1Q9NZC9 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMARCAL1Q9NZC9 IKBKGP1-201ENST00000612193 1073 ntBASIC20.51■□□□□ 0.87
SMARCAL1Q9NZC9 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
SMARCAL1Q9NZC9 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.51■□□□□ 0.87
SMARCAL1Q9NZC9 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SMARCAL1Q9NZC9 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SMARCAL1Q9NZC9 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC20.51■□□□□ 0.87
SMARCAL1Q9NZC9 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SMARCAL1Q9NZC9 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SMARCAL1Q9NZC9 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SMARCAL1Q9NZC9 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMARCAL1Q9NZC9 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMARCAL1Q9NZC9 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SMARCAL1Q9NZC9 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMARCAL1Q9NZC9 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC20.5■□□□□ 0.87
SMARCAL1Q9NZC9 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMARCAL1Q9NZC9 KRT18P68-201ENST00000392293 1000 ntBASIC20.5■□□□□ 0.87
SMARCAL1Q9NZC9 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.5■□□□□ 0.87
SMARCAL1Q9NZC9 CNN2P6-201ENST00000439038 900 ntBASIC20.5■□□□□ 0.87
SMARCAL1Q9NZC9 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.5■□□□□ 0.87
SMARCAL1Q9NZC9 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.5■□□□□ 0.87
SMARCAL1Q9NZC9 AC011767.1-201ENST00000617410 1153 ntBASIC20.5■□□□□ 0.87
SMARCAL1Q9NZC9 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMARCAL1Q9NZC9 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC20.5■□□□□ 0.87
SMARCAL1Q9NZC9 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMARCAL1Q9NZC9 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMARCAL1Q9NZC9 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMARCAL1Q9NZC9 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMARCAL1Q9NZC9 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
SMARCAL1Q9NZC9 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMARCAL1Q9NZC9 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.5■□□□□ 0.87
SMARCAL1Q9NZC9 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SMARCAL1Q9NZC9 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SMARCAL1Q9NZC9 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
SMARCAL1Q9NZC9 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SMARCAL1Q9NZC9 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC20.49■□□□□ 0.87
SMARCAL1Q9NZC9 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
SMARCAL1Q9NZC9 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SMARCAL1Q9NZC9 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SMARCAL1Q9NZC9 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.49■□□□□ 0.87
SMARCAL1Q9NZC9 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.49■□□□□ 0.87
SMARCAL1Q9NZC9 BID-214ENST00000617586 542 ntTSL 5 BASIC20.49■□□□□ 0.87
SMARCAL1Q9NZC9 AC068338.2-201ENST00000563278 1430 ntBASIC20.49■□□□□ 0.87
SMARCAL1Q9NZC9 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.49■□□□□ 0.87
SMARCAL1Q9NZC9 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SMARCAL1Q9NZC9 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
SMARCAL1Q9NZC9 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.49■□□□□ 0.87
SMARCAL1Q9NZC9 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SMARCAL1Q9NZC9 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SMARCAL1Q9NZC9 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SMARCAL1Q9NZC9 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC20.49■□□□□ 0.87
SMARCAL1Q9NZC9 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
SMARCAL1Q9NZC9 AR-207ENST00000612010 3896 ntTSL 5 BASIC20.49■□□□□ 0.87
SMARCAL1Q9NZC9 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMARCAL1Q9NZC9 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
SMARCAL1Q9NZC9 AC020763.4-201ENST00000623414 4170 ntBASIC20.48■□□□□ 0.87
SMARCAL1Q9NZC9 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.48■□□□□ 0.87
SMARCAL1Q9NZC9 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMARCAL1Q9NZC9 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SMARCAL1Q9NZC9 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
SMARCAL1Q9NZC9 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SMARCAL1Q9NZC9 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMARCAL1Q9NZC9 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMARCAL1Q9NZC9 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.48■□□□□ 0.87
SMARCAL1Q9NZC9 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC20.48■□□□□ 0.87
SMARCAL1Q9NZC9 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.48■□□□□ 0.87
SMARCAL1Q9NZC9 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
SMARCAL1Q9NZC9 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
SMARCAL1Q9NZC9 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.48■□□□□ 0.87
SMARCAL1Q9NZC9 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMARCAL1Q9NZC9 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SMARCAL1Q9NZC9 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms