Protein–RNA interactions for Protein: Q9H444

CHMP4B, Charged multivesicular body protein 4b, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4BQ9H444 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
CHMP4BQ9H444 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CHMP4BQ9H444 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC24.61■■□□□ 1.53
CHMP4BQ9H444 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC24.61■■□□□ 1.53
CHMP4BQ9H444 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC24.61■■□□□ 1.53
CHMP4BQ9H444 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
CHMP4BQ9H444 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
CHMP4BQ9H444 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC24.6■■□□□ 1.53
CHMP4BQ9H444 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CHMP4BQ9H444 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC24.6■■□□□ 1.53
CHMP4BQ9H444 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC24.6■■□□□ 1.53
CHMP4BQ9H444 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC24.6■■□□□ 1.53
CHMP4BQ9H444 KRT17P3-201ENST00000420566 1262 ntBASIC24.6■■□□□ 1.53
CHMP4BQ9H444 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
CHMP4BQ9H444 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC24.6■■□□□ 1.53
CHMP4BQ9H444 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CHMP4BQ9H444 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC24.6■■□□□ 1.53
CHMP4BQ9H444 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
CHMP4BQ9H444 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC24.6■■□□□ 1.53
CHMP4BQ9H444 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
CHMP4BQ9H444 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CHMP4BQ9H444 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
CHMP4BQ9H444 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC24.6■■□□□ 1.53
CHMP4BQ9H444 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC24.6■■□□□ 1.53
CHMP4BQ9H444 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CHMP4BQ9H444 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CHMP4BQ9H444 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CHMP4BQ9H444 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
CHMP4BQ9H444 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC24.59■■□□□ 1.53
CHMP4BQ9H444 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
CHMP4BQ9H444 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
CHMP4BQ9H444 RNA5SP413-201ENST00000516373 109 ntBASIC24.59■■□□□ 1.53
CHMP4BQ9H444 AP003097.1-201ENST00000530657 1135 ntBASIC24.59■■□□□ 1.53
CHMP4BQ9H444 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
CHMP4BQ9H444 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC24.59■■□□□ 1.53
CHMP4BQ9H444 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC24.58■■□□□ 1.53
CHMP4BQ9H444 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
CHMP4BQ9H444 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CHMP4BQ9H444 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
CHMP4BQ9H444 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CHMP4BQ9H444 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CHMP4BQ9H444 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
CHMP4BQ9H444 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
CHMP4BQ9H444 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC24.58■■□□□ 1.53
CHMP4BQ9H444 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC24.58■■□□□ 1.53
CHMP4BQ9H444 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC24.58■■□□□ 1.53
CHMP4BQ9H444 AC026366.1-201ENST00000488803 879 ntBASIC24.58■■□□□ 1.53
CHMP4BQ9H444 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC24.58■■□□□ 1.53
CHMP4BQ9H444 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC24.58■■□□□ 1.53
CHMP4BQ9H444 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
CHMP4BQ9H444 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC24.58■■□□□ 1.53
CHMP4BQ9H444 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC24.58■■□□□ 1.52
CHMP4BQ9H444 ZNF815P-204ENST00000434898 1737 ntBASIC24.58■■□□□ 1.52
CHMP4BQ9H444 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC24.58■■□□□ 1.52
CHMP4BQ9H444 AC007952.6-201ENST00000573168 2673 ntBASIC24.58■■□□□ 1.52
CHMP4BQ9H444 AC003957.1-201ENST00000625108 2673 ntBASIC24.58■■□□□ 1.52
CHMP4BQ9H444 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.52
CHMP4BQ9H444 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC24.58■■□□□ 1.52
CHMP4BQ9H444 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CHMP4BQ9H444 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC24.57■■□□□ 1.52
CHMP4BQ9H444 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
CHMP4BQ9H444 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC24.57■■□□□ 1.52
CHMP4BQ9H444 ANKRD18DP-204ENST00000455355 1975 ntBASIC24.57■■□□□ 1.52
CHMP4BQ9H444 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC24.57■■□□□ 1.52
CHMP4BQ9H444 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC24.57■■□□□ 1.52
CHMP4BQ9H444 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC24.57■■□□□ 1.52
CHMP4BQ9H444 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
CHMP4BQ9H444 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
CHMP4BQ9H444 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC24.57■■□□□ 1.52
CHMP4BQ9H444 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
CHMP4BQ9H444 AC008403.3-201ENST00000598924 454 ntBASIC24.57■■□□□ 1.52
CHMP4BQ9H444 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC24.57■■□□□ 1.52
CHMP4BQ9H444 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC24.57■■□□□ 1.52
CHMP4BQ9H444 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
CHMP4BQ9H444 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CHMP4BQ9H444 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC24.56■■□□□ 1.52
CHMP4BQ9H444 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CHMP4BQ9H444 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC24.56■■□□□ 1.52
CHMP4BQ9H444 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC24.56■■□□□ 1.52
CHMP4BQ9H444 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC24.56■■□□□ 1.52
CHMP4BQ9H444 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC24.56■■□□□ 1.52
CHMP4BQ9H444 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
CHMP4BQ9H444 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC24.56■■□□□ 1.52
CHMP4BQ9H444 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC24.56■■□□□ 1.52
CHMP4BQ9H444 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC24.56■■□□□ 1.52
CHMP4BQ9H444 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC24.56■■□□□ 1.52
CHMP4BQ9H444 RHOD-202ENST00000532559 538 ntTSL 3 BASIC24.56■■□□□ 1.52
CHMP4BQ9H444 KRT18P6-201ENST00000555540 1265 ntBASIC24.56■■□□□ 1.52
CHMP4BQ9H444 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC24.56■■□□□ 1.52
CHMP4BQ9H444 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
CHMP4BQ9H444 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
CHMP4BQ9H444 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC24.55■■□□□ 1.52
CHMP4BQ9H444 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC24.55■■□□□ 1.52
CHMP4BQ9H444 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC24.55■■□□□ 1.52
CHMP4BQ9H444 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC24.55■■□□□ 1.52
CHMP4BQ9H444 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
CHMP4BQ9H444 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC24.55■■□□□ 1.52
CHMP4BQ9H444 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
CHMP4BQ9H444 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC24.55■■□□□ 1.52
CHMP4BQ9H444 THEM4-205ENST00000489410 643 ntTSL 2 BASIC24.55■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms