Protein–RNA interactions for Protein: Q8WU17

RNF139, E3 ubiquitin-protein ligase RNF139, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF139Q8WU17 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF139Q8WU17 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF139Q8WU17 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RNF139Q8WU17 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.5■□□□□ 0.87
RNF139Q8WU17 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RNF139Q8WU17 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.49■□□□□ 0.87
RNF139Q8WU17 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.49■□□□□ 0.87
RNF139Q8WU17 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.49■□□□□ 0.87
RNF139Q8WU17 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RNF139Q8WU17 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF139Q8WU17 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
RNF139Q8WU17 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
RNF139Q8WU17 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF139Q8WU17 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF139Q8WU17 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RNF139Q8WU17 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
RNF139Q8WU17 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.49■□□□□ 0.87
RNF139Q8WU17 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.49■□□□□ 0.87
RNF139Q8WU17 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
RNF139Q8WU17 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.49■□□□□ 0.87
RNF139Q8WU17 Z99916.2-201ENST00000604037 246 ntBASIC20.49■□□□□ 0.87
RNF139Q8WU17 AP001412.1-201ENST00000608405 714 ntBASIC20.49■□□□□ 0.87
RNF139Q8WU17 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
RNF139Q8WU17 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.49■□□□□ 0.87
RNF139Q8WU17 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF139Q8WU17 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF139Q8WU17 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
RNF139Q8WU17 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
RNF139Q8WU17 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF139Q8WU17 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF139Q8WU17 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF139Q8WU17 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
RNF139Q8WU17 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RNF139Q8WU17 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
RNF139Q8WU17 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.48■□□□□ 0.87
RNF139Q8WU17 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
RNF139Q8WU17 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
RNF139Q8WU17 AC125437.2-201ENST00000625180 2167 ntBASIC20.48■□□□□ 0.87
RNF139Q8WU17 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
RNF139Q8WU17 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.48■□□□□ 0.87
RNF139Q8WU17 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
RNF139Q8WU17 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNF139Q8WU17 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNF139Q8WU17 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF139Q8WU17 RPS2P55-201ENST00000397318 883 ntBASIC20.48■□□□□ 0.87
RNF139Q8WU17 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF139Q8WU17 AL353807.1-201ENST00000427475 662 ntBASIC20.48■□□□□ 0.87
RNF139Q8WU17 AC012618.2-201ENST00000428058 849 ntBASIC20.48■□□□□ 0.87
RNF139Q8WU17 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
RNF139Q8WU17 AC107956.1-201ENST00000494359 873 ntBASIC20.48■□□□□ 0.87
RNF139Q8WU17 KRT18P16-201ENST00000510337 1294 ntBASIC20.48■□□□□ 0.87
RNF139Q8WU17 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
RNF139Q8WU17 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.48■□□□□ 0.87
RNF139Q8WU17 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.48■□□□□ 0.87
RNF139Q8WU17 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RNF139Q8WU17 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
RNF139Q8WU17 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF139Q8WU17 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.48■□□□□ 0.87
RNF139Q8WU17 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
RNF139Q8WU17 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
RNF139Q8WU17 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.48■□□□□ 0.87
RNF139Q8WU17 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
RNF139Q8WU17 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RNF139Q8WU17 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF139Q8WU17 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.47■□□□□ 0.87
RNF139Q8WU17 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
RNF139Q8WU17 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RNF139Q8WU17 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF139Q8WU17 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF139Q8WU17 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.47■□□□□ 0.87
RNF139Q8WU17 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF139Q8WU17 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RNF139Q8WU17 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.47■□□□□ 0.87
RNF139Q8WU17 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.47■□□□□ 0.87
RNF139Q8WU17 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
RNF139Q8WU17 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RNF139Q8WU17 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RNF139Q8WU17 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.47■□□□□ 0.87
RNF139Q8WU17 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
RNF139Q8WU17 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF139Q8WU17 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.47■□□□□ 0.87
RNF139Q8WU17 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.47■□□□□ 0.87
RNF139Q8WU17 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.47■□□□□ 0.87
RNF139Q8WU17 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF139Q8WU17 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
RNF139Q8WU17 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
RNF139Q8WU17 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
RNF139Q8WU17 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.47■□□□□ 0.87
RNF139Q8WU17 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
RNF139Q8WU17 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
RNF139Q8WU17 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF139Q8WU17 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF139Q8WU17 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF139Q8WU17 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF139Q8WU17 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF139Q8WU17 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RNF139Q8WU17 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF139Q8WU17 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.46■□□□□ 0.87
RNF139Q8WU17 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
RNF139Q8WU17 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms