Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC19.02■□□□□ 0.64
LMX1AQ8TE12 AC091390.4-202ENST00000476426 537 ntBASIC19.02■□□□□ 0.64
LMX1AQ8TE12 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.02■□□□□ 0.64
LMX1AQ8TE12 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC19.02■□□□□ 0.64
LMX1AQ8TE12 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LMX1AQ8TE12 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.02■□□□□ 0.64
LMX1AQ8TE12 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.02■□□□□ 0.64
LMX1AQ8TE12 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.02■□□□□ 0.64
LMX1AQ8TE12 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
LMX1AQ8TE12 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
LMX1AQ8TE12 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
LMX1AQ8TE12 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LMX1AQ8TE12 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
LMX1AQ8TE12 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
LMX1AQ8TE12 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
LMX1AQ8TE12 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LMX1AQ8TE12 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LMX1AQ8TE12 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC19.01■□□□□ 0.63
LMX1AQ8TE12 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.01■□□□□ 0.63
LMX1AQ8TE12 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC19.01■□□□□ 0.63
LMX1AQ8TE12 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.01■□□□□ 0.63
LMX1AQ8TE12 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.01■□□□□ 0.63
LMX1AQ8TE12 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC19.01■□□□□ 0.63
LMX1AQ8TE12 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC19.01■□□□□ 0.63
LMX1AQ8TE12 RMI2-205ENST00000576027 818 ntTSL 2 BASIC19.01■□□□□ 0.63
LMX1AQ8TE12 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LMX1AQ8TE12 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LMX1AQ8TE12 AL512408.1-201ENST00000569378 2000 ntBASIC19.01■□□□□ 0.63
LMX1AQ8TE12 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
LMX1AQ8TE12 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.01■□□□□ 0.63
LMX1AQ8TE12 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
LMX1AQ8TE12 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LMX1AQ8TE12 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
LMX1AQ8TE12 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19■□□□□ 0.63
LMX1AQ8TE12 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19■□□□□ 0.63
LMX1AQ8TE12 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC19■□□□□ 0.63
LMX1AQ8TE12 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC19■□□□□ 0.63
LMX1AQ8TE12 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
LMX1AQ8TE12 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19■□□□□ 0.63
LMX1AQ8TE12 AC104076.2-201ENST00000448912 469 ntBASIC19■□□□□ 0.63
LMX1AQ8TE12 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LMX1AQ8TE12 NME1-207ENST00000480143 964 ntTSL 2 BASIC19■□□□□ 0.63
LMX1AQ8TE12 Z85996.1-201ENST00000494644 937 ntBASIC19■□□□□ 0.63
LMX1AQ8TE12 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC19■□□□□ 0.63
LMX1AQ8TE12 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC19■□□□□ 0.63
LMX1AQ8TE12 AL160286.2-201ENST00000567150 934 ntBASIC19■□□□□ 0.63
LMX1AQ8TE12 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19■□□□□ 0.63
LMX1AQ8TE12 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
LMX1AQ8TE12 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19■□□□□ 0.63
LMX1AQ8TE12 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
LMX1AQ8TE12 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC19■□□□□ 0.63
LMX1AQ8TE12 FEM1AP1-201ENST00000431297 1995 ntBASIC19■□□□□ 0.63
LMX1AQ8TE12 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19■□□□□ 0.63
LMX1AQ8TE12 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
LMX1AQ8TE12 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LMX1AQ8TE12 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19■□□□□ 0.63
LMX1AQ8TE12 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19■□□□□ 0.63
LMX1AQ8TE12 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
LMX1AQ8TE12 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.99■□□□□ 0.63
LMX1AQ8TE12 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LMX1AQ8TE12 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
LMX1AQ8TE12 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LMX1AQ8TE12 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LMX1AQ8TE12 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
LMX1AQ8TE12 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LMX1AQ8TE12 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.99■□□□□ 0.63
LMX1AQ8TE12 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LMX1AQ8TE12 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
LMX1AQ8TE12 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.99■□□□□ 0.63
LMX1AQ8TE12 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.99■□□□□ 0.63
LMX1AQ8TE12 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.99■□□□□ 0.63
LMX1AQ8TE12 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
LMX1AQ8TE12 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LMX1AQ8TE12 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
LMX1AQ8TE12 DUX4L26-201ENST00000489078 1255 ntBASIC18.99■□□□□ 0.63
LMX1AQ8TE12 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC18.99■□□□□ 0.63
LMX1AQ8TE12 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.99■□□□□ 0.63
LMX1AQ8TE12 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.99■□□□□ 0.63
LMX1AQ8TE12 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.99■□□□□ 0.63
LMX1AQ8TE12 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
LMX1AQ8TE12 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
LMX1AQ8TE12 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
LMX1AQ8TE12 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
LMX1AQ8TE12 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.98■□□□□ 0.63
LMX1AQ8TE12 LINC01465-201ENST00000408887 1940 ntBASIC18.98■□□□□ 0.63
LMX1AQ8TE12 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LMX1AQ8TE12 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LMX1AQ8TE12 FAM87A-204ENST00000613235 858 ntBASIC18.98■□□□□ 0.63
LMX1AQ8TE12 AC116562.4-202ENST00000641738 218 ntBASIC18.98■□□□□ 0.63
LMX1AQ8TE12 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
LMX1AQ8TE12 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
LMX1AQ8TE12 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.98■□□□□ 0.63
LMX1AQ8TE12 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LMX1AQ8TE12 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.98■□□□□ 0.63
LMX1AQ8TE12 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LMX1AQ8TE12 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.98■□□□□ 0.63
LMX1AQ8TE12 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
LMX1AQ8TE12 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.98■□□□□ 0.63
LMX1AQ8TE12 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
LMX1AQ8TE12 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms