Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC16.8■□□□□ 0.28
ABCA4P78363 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC16.8■□□□□ 0.28
ABCA4P78363 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ABCA4P78363 AL691432.2-201ENST00000607222 2038 ntBASIC16.79■□□□□ 0.28
ABCA4P78363 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC16.79■□□□□ 0.28
ABCA4P78363 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
ABCA4P78363 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
ABCA4P78363 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC16.79■□□□□ 0.28
ABCA4P78363 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
ABCA4P78363 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC16.79■□□□□ 0.28
ABCA4P78363 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.79■□□□□ 0.28
ABCA4P78363 AL137060.1-201ENST00000618151 2648 ntBASIC16.79■□□□□ 0.28
ABCA4P78363 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ABCA4P78363 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ABCA4P78363 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ABCA4P78363 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ABCA4P78363 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC16.79■□□□□ 0.28
ABCA4P78363 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ABCA4P78363 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC16.79■□□□□ 0.28
ABCA4P78363 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC16.79■□□□□ 0.28
ABCA4P78363 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.79■□□□□ 0.28
ABCA4P78363 SAPCD2P2-201ENST00000431719 1174 ntBASIC16.79■□□□□ 0.28
ABCA4P78363 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.79■□□□□ 0.28
ABCA4P78363 TUBB8P6-201ENST00000436895 1288 ntBASIC16.79■□□□□ 0.28
ABCA4P78363 AC009947.2-201ENST00000444014 672 ntBASIC16.79■□□□□ 0.28
ABCA4P78363 FAM207BP-201ENST00000447172 505 ntBASIC16.79■□□□□ 0.28
ABCA4P78363 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC16.79■□□□□ 0.28
ABCA4P78363 CD320-202ENST00000537716 1119 ntTSL 2 BASIC16.79■□□□□ 0.28
ABCA4P78363 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC16.79■□□□□ 0.28
ABCA4P78363 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC16.78■□□□□ 0.28
ABCA4P78363 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ABCA4P78363 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ABCA4P78363 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ABCA4P78363 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
ABCA4P78363 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
ABCA4P78363 AC007375.3-201ENST00000600936 2314 ntBASIC16.78■□□□□ 0.28
ABCA4P78363 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC16.78■□□□□ 0.28
ABCA4P78363 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
ABCA4P78363 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ABCA4P78363 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ABCA4P78363 AL450487.1-201ENST00000426799 995 ntBASIC16.78■□□□□ 0.28
ABCA4P78363 HCG4P8-203ENST00000443049 980 ntBASIC16.78■□□□□ 0.28
ABCA4P78363 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC16.78■□□□□ 0.28
ABCA4P78363 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.78■□□□□ 0.28
ABCA4P78363 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC16.78■□□□□ 0.28
ABCA4P78363 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.78■□□□□ 0.28
ABCA4P78363 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
ABCA4P78363 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ABCA4P78363 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC16.78■□□□□ 0.28
ABCA4P78363 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ABCA4P78363 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
ABCA4P78363 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
ABCA4P78363 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ABCA4P78363 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC16.78■□□□□ 0.28
ABCA4P78363 PALM-208ENST00000592155 2272 ntTSL 4 BASIC16.78■□□□□ 0.28
ABCA4P78363 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ABCA4P78363 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC16.77■□□□□ 0.28
ABCA4P78363 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ABCA4P78363 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.77■□□□□ 0.28
ABCA4P78363 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC16.77■□□□□ 0.28
ABCA4P78363 MFAP1P1-201ENST00000442257 1255 ntBASIC16.77■□□□□ 0.28
ABCA4P78363 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC16.77■□□□□ 0.28
ABCA4P78363 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC16.77■□□□□ 0.28
ABCA4P78363 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ABCA4P78363 KRT16P6-202ENST00000425692 1426 ntBASIC16.77■□□□□ 0.28
ABCA4P78363 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC16.77■□□□□ 0.28
ABCA4P78363 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
ABCA4P78363 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC16.77■□□□□ 0.28
ABCA4P78363 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC16.77■□□□□ 0.28
ABCA4P78363 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ABCA4P78363 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ABCA4P78363 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ABCA4P78363 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC16.77■□□□□ 0.28
ABCA4P78363 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC16.77■□□□□ 0.28
ABCA4P78363 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ABCA4P78363 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ABCA4P78363 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ABCA4P78363 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC16.77■□□□□ 0.27
ABCA4P78363 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ABCA4P78363 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.77■□□□□ 0.27
ABCA4P78363 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC16.77■□□□□ 0.27
ABCA4P78363 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC16.77■□□□□ 0.27
ABCA4P78363 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC16.77■□□□□ 0.27
ABCA4P78363 AC131212.4-201ENST00000623606 975 ntBASIC16.77■□□□□ 0.27
ABCA4P78363 HLA-A-209ENST00000638375 975 ntBASIC16.77■□□□□ 0.27
ABCA4P78363 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ABCA4P78363 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ABCA4P78363 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC16.77■□□□□ 0.27
ABCA4P78363 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
ABCA4P78363 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
ABCA4P78363 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
ABCA4P78363 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.76■□□□□ 0.27
ABCA4P78363 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
ABCA4P78363 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
ABCA4P78363 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.76■□□□□ 0.27
ABCA4P78363 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC16.76■□□□□ 0.27
ABCA4P78363 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
ABCA4P78363 PHGDH-210ENST00000641115 1638 ntBASIC16.76■□□□□ 0.27
ABCA4P78363 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
ABCA4P78363 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms