Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
RNF4P78317 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
RNF4P78317 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.08■□□□□ 0.49
RNF4P78317 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC18.08■□□□□ 0.49
RNF4P78317 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.48
RNF4P78317 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
RNF4P78317 AL596275.1-201ENST00000423464 877 ntBASIC18.08■□□□□ 0.48
RNF4P78317 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
RNF4P78317 SNORA78-201ENST00000459373 127 ntBASIC18.08■□□□□ 0.48
RNF4P78317 MIR4497-201ENST00000583208 89 ntBASIC18.08■□□□□ 0.48
RNF4P78317 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RNF4P78317 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.08■□□□□ 0.48
RNF4P78317 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.08■□□□□ 0.48
RNF4P78317 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RNF4P78317 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RNF4P78317 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RNF4P78317 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RNF4P78317 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.08■□□□□ 0.48
RNF4P78317 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RNF4P78317 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RNF4P78317 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RNF4P78317 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
RNF4P78317 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF4P78317 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF4P78317 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.07■□□□□ 0.48
RNF4P78317 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF4P78317 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF4P78317 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
RNF4P78317 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF4P78317 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF4P78317 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.07■□□□□ 0.48
RNF4P78317 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF4P78317 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF4P78317 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.07■□□□□ 0.48
RNF4P78317 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF4P78317 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.07■□□□□ 0.48
RNF4P78317 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.07■□□□□ 0.48
RNF4P78317 KSR1P1-201ENST00000446298 240 ntBASIC18.07■□□□□ 0.48
RNF4P78317 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.07■□□□□ 0.48
RNF4P78317 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.07■□□□□ 0.48
RNF4P78317 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.07■□□□□ 0.48
RNF4P78317 CD177P1-201ENST00000606252 935 ntBASIC18.07■□□□□ 0.48
RNF4P78317 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF4P78317 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF4P78317 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
RNF4P78317 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
RNF4P78317 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.07■□□□□ 0.48
RNF4P78317 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
RNF4P78317 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF4P78317 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RNF4P78317 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RNF4P78317 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF4P78317 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF4P78317 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
RNF4P78317 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RNF4P78317 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.06■□□□□ 0.48
RNF4P78317 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF4P78317 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF4P78317 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
RNF4P78317 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF4P78317 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF4P78317 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.06■□□□□ 0.48
RNF4P78317 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC18.06■□□□□ 0.48
RNF4P78317 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.06■□□□□ 0.48
RNF4P78317 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.06■□□□□ 0.48
RNF4P78317 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF4P78317 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF4P78317 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
RNF4P78317 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
RNF4P78317 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF4P78317 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.06■□□□□ 0.48
RNF4P78317 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF4P78317 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
RNF4P78317 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
RNF4P78317 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.06■□□□□ 0.48
RNF4P78317 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RNF4P78317 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.05■□□□□ 0.48
RNF4P78317 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.05■□□□□ 0.48
RNF4P78317 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF4P78317 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RNF4P78317 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RNF4P78317 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.05■□□□□ 0.48
RNF4P78317 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.05■□□□□ 0.48
RNF4P78317 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.05■□□□□ 0.48
RNF4P78317 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF4P78317 FAM197Y1-201ENST00000421178 764 ntBASIC18.05■□□□□ 0.48
RNF4P78317 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.05■□□□□ 0.48
RNF4P78317 TSPY7P-201ENST00000431358 1114 ntBASIC18.05■□□□□ 0.48
RNF4P78317 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF4P78317 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.05■□□□□ 0.48
RNF4P78317 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RNF4P78317 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.05■□□□□ 0.48
RNF4P78317 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF4P78317 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF4P78317 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.05■□□□□ 0.48
RNF4P78317 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
RNF4P78317 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
RNF4P78317 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
RNF4P78317 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
RNF4P78317 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms