Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC083906.2-201ENST00000511578 360 ntBASIC18.88■□□□□ 0.61
FOXA1P55317 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC18.88■□□□□ 0.61
FOXA1P55317 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.88■□□□□ 0.61
FOXA1P55317 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
FOXA1P55317 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
FOXA1P55317 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
FOXA1P55317 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
FOXA1P55317 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.88■□□□□ 0.61
FOXA1P55317 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
FOXA1P55317 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.88■□□□□ 0.61
FOXA1P55317 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
FOXA1P55317 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
FOXA1P55317 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
FOXA1P55317 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
FOXA1P55317 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.88■□□□□ 0.61
FOXA1P55317 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
FOXA1P55317 AC120498.9-201ENST00000339021 3867 ntBASIC18.87■□□□□ 0.61
FOXA1P55317 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
FOXA1P55317 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
FOXA1P55317 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.87■□□□□ 0.61
FOXA1P55317 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
FOXA1P55317 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
FOXA1P55317 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
FOXA1P55317 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
FOXA1P55317 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
FOXA1P55317 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.87■□□□□ 0.61
FOXA1P55317 AL390719.1-204ENST00000412397 1219 ntBASIC18.87■□□□□ 0.61
FOXA1P55317 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
FOXA1P55317 GUSBP6-202ENST00000438529 1198 ntBASIC18.87■□□□□ 0.61
FOXA1P55317 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
FOXA1P55317 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
FOXA1P55317 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18.87■□□□□ 0.61
FOXA1P55317 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.87■□□□□ 0.61
FOXA1P55317 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
FOXA1P55317 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.87■□□□□ 0.61
FOXA1P55317 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.87■□□□□ 0.61
FOXA1P55317 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
FOXA1P55317 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
FOXA1P55317 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.87■□□□□ 0.61
FOXA1P55317 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
FOXA1P55317 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
FOXA1P55317 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
FOXA1P55317 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.86■□□□□ 0.61
FOXA1P55317 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
FOXA1P55317 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
FOXA1P55317 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.86■□□□□ 0.61
FOXA1P55317 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
FOXA1P55317 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
FOXA1P55317 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC18.86■□□□□ 0.61
FOXA1P55317 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
FOXA1P55317 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.86■□□□□ 0.61
FOXA1P55317 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
FOXA1P55317 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.86■□□□□ 0.61
FOXA1P55317 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.86■□□□□ 0.61
FOXA1P55317 AC091874.3-201ENST00000512672 1195 ntBASIC18.86■□□□□ 0.61
FOXA1P55317 AL121832.2-201ENST00000610979 668 ntBASIC18.86■□□□□ 0.61
FOXA1P55317 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
FOXA1P55317 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
FOXA1P55317 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
FOXA1P55317 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
FOXA1P55317 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
FOXA1P55317 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
FOXA1P55317 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
FOXA1P55317 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.86■□□□□ 0.61
FOXA1P55317 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
FOXA1P55317 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
FOXA1P55317 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC18.86■□□□□ 0.61
FOXA1P55317 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
FOXA1P55317 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
FOXA1P55317 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
FOXA1P55317 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.86■□□□□ 0.61
FOXA1P55317 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
FOXA1P55317 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
FOXA1P55317 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA1P55317 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA1P55317 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA1P55317 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.85■□□□□ 0.61
FOXA1P55317 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA1P55317 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA1P55317 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA1P55317 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.85■□□□□ 0.61
FOXA1P55317 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
FOXA1P55317 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA1P55317 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
FOXA1P55317 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.85■□□□□ 0.61
FOXA1P55317 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.85■□□□□ 0.61
FOXA1P55317 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA1P55317 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA1P55317 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA1P55317 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA1P55317 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA1P55317 ZNF815P-204ENST00000434898 1737 ntBASIC18.85■□□□□ 0.61
FOXA1P55317 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA1P55317 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.85■□□□□ 0.61
FOXA1P55317 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.85■□□□□ 0.61
FOXA1P55317 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA1P55317 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
FOXA1P55317 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
FOXA1P55317 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
FOXA1P55317 AC141586.3-201ENST00000562166 1838 ntBASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms