Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.28■□□□□ 0.84
CDH6P55285 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.28■□□□□ 0.84
CDH6P55285 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
CDH6P55285 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
CDH6P55285 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CDH6P55285 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH6P55285 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CDH6P55285 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.28■□□□□ 0.84
CDH6P55285 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH6P55285 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH6P55285 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CDH6P55285 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.28■□□□□ 0.84
CDH6P55285 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH6P55285 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH6P55285 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH6P55285 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH6P55285 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH6P55285 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH6P55285 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH6P55285 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH6P55285 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CDH6P55285 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH6P55285 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH6P55285 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH6P55285 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
CDH6P55285 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH6P55285 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.27■□□□□ 0.84
CDH6P55285 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH6P55285 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.27■□□□□ 0.84
CDH6P55285 GAS7-202ENST00000396115 929 ntTSL 5 BASIC20.27■□□□□ 0.84
CDH6P55285 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.27■□□□□ 0.84
CDH6P55285 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.27■□□□□ 0.84
CDH6P55285 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
CDH6P55285 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CDH6P55285 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CDH6P55285 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
CDH6P55285 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CDH6P55285 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
CDH6P55285 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.26■□□□□ 0.83
CDH6P55285 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.26■□□□□ 0.83
CDH6P55285 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.26■□□□□ 0.83
CDH6P55285 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH6P55285 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC20.26■□□□□ 0.83
CDH6P55285 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH6P55285 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH6P55285 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
CDH6P55285 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CDH6P55285 POM121L13P-201ENST00000422362 380 ntBASIC20.26■□□□□ 0.83
CDH6P55285 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH6P55285 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.26■□□□□ 0.83
CDH6P55285 YBX1P10-201ENST00000444752 975 ntBASIC20.26■□□□□ 0.83
CDH6P55285 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CDH6P55285 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC20.26■□□□□ 0.83
CDH6P55285 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CDH6P55285 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.26■□□□□ 0.83
CDH6P55285 AL032819.2-201ENST00000624543 2162 ntBASIC20.26■□□□□ 0.83
CDH6P55285 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH6P55285 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CDH6P55285 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH6P55285 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CDH6P55285 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CDH6P55285 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH6P55285 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
CDH6P55285 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.26■□□□□ 0.83
CDH6P55285 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CDH6P55285 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CDH6P55285 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CDH6P55285 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDH6P55285 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDH6P55285 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.25■□□□□ 0.83
CDH6P55285 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDH6P55285 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDH6P55285 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.25■□□□□ 0.83
CDH6P55285 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.25■□□□□ 0.83
CDH6P55285 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.25■□□□□ 0.83
CDH6P55285 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.25■□□□□ 0.83
CDH6P55285 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CDH6P55285 AC008403.3-201ENST00000598924 454 ntBASIC20.25■□□□□ 0.83
CDH6P55285 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CDH6P55285 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDH6P55285 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CDH6P55285 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
CDH6P55285 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.25■□□□□ 0.83
CDH6P55285 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.25■□□□□ 0.83
CDH6P55285 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDH6P55285 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDH6P55285 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDH6P55285 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CDH6P55285 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CDH6P55285 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CDH6P55285 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDH6P55285 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.24■□□□□ 0.83
CDH6P55285 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.24■□□□□ 0.83
CDH6P55285 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CDH6P55285 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDH6P55285 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDH6P55285 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.24■□□□□ 0.83
CDH6P55285 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.24■□□□□ 0.83
CDH6P55285 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.24■□□□□ 0.83
CDH6P55285 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms