Protein–RNA interactions for Protein: P48539

PCP4, Calmodulin regulator protein PCP4, humanhuman

Predictions only

Length 62 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCP4P48539 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCP4P48539 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC13.53□□□□□ -0.24
PCP4P48539 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCP4P48539 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC13.53□□□□□ -0.24
PCP4P48539 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCP4P48539 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCP4P48539 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC13.53□□□□□ -0.24
PCP4P48539 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC13.53□□□□□ -0.24
PCP4P48539 LINC02199-201ENST00000506655 2702 ntBASIC13.53□□□□□ -0.24
PCP4P48539 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCP4P48539 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCP4P48539 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCP4P48539 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCP4P48539 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCP4P48539 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCP4P48539 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCP4P48539 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC13.53□□□□□ -0.24
PCP4P48539 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCP4P48539 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
PCP4P48539 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCP4P48539 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
PCP4P48539 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC13.53□□□□□ -0.24
PCP4P48539 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
PCP4P48539 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC13.53□□□□□ -0.24
PCP4P48539 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC13.53□□□□□ -0.24
PCP4P48539 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
PCP4P48539 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC13.53□□□□□ -0.24
PCP4P48539 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
PCP4P48539 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
PCP4P48539 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
PCP4P48539 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
PCP4P48539 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC13.53□□□□□ -0.24
PCP4P48539 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
PCP4P48539 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
PCP4P48539 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
PCP4P48539 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
PCP4P48539 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC13.52□□□□□ -0.24
PCP4P48539 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
PCP4P48539 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
PCP4P48539 AL137784.3-201ENST00000623858 2288 ntBASIC13.52□□□□□ -0.24
PCP4P48539 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
PCP4P48539 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
PCP4P48539 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
PCP4P48539 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
PCP4P48539 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
PCP4P48539 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
PCP4P48539 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
PCP4P48539 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
PCP4P48539 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
PCP4P48539 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC13.52□□□□□ -0.24
PCP4P48539 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
PCP4P48539 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC13.52□□□□□ -0.25
PCP4P48539 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC13.52□□□□□ -0.25
PCP4P48539 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC13.52□□□□□ -0.25
PCP4P48539 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC13.52□□□□□ -0.25
PCP4P48539 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC13.52□□□□□ -0.25
PCP4P48539 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
PCP4P48539 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
PCP4P48539 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
PCP4P48539 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
PCP4P48539 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
PCP4P48539 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCP4P48539 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCP4P48539 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
PCP4P48539 CR383656.2-201ENST00000548656 2254 ntBASIC13.51□□□□□ -0.25
PCP4P48539 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
PCP4P48539 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCP4P48539 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC13.51□□□□□ -0.25
PCP4P48539 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCP4P48539 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
PCP4P48539 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCP4P48539 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC13.51□□□□□ -0.25
PCP4P48539 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC13.51□□□□□ -0.25
PCP4P48539 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
PCP4P48539 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCP4P48539 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC13.51□□□□□ -0.25
PCP4P48539 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC13.51□□□□□ -0.25
PCP4P48539 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCP4P48539 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCP4P48539 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCP4P48539 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCP4P48539 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
PCP4P48539 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC13.51□□□□□ -0.25
PCP4P48539 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
PCP4P48539 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC13.5□□□□□ -0.25
PCP4P48539 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
PCP4P48539 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
PCP4P48539 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
PCP4P48539 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
PCP4P48539 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
PCP4P48539 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
PCP4P48539 AC009102.2-201ENST00000606772 1639 ntBASIC13.5□□□□□ -0.25
PCP4P48539 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
PCP4P48539 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
PCP4P48539 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
PCP4P48539 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
PCP4P48539 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC13.5□□□□□ -0.25
PCP4P48539 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
PCP4P48539 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
PCP4P48539 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms