Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSX1P28360 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
MSX1P28360 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
MSX1P28360 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
MSX1P28360 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSX1P28360 GOLGA6L3-201ENST00000507199 1679 ntBASIC17.88■□□□□ 0.45
MSX1P28360 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSX1P28360 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSX1P28360 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSX1P28360 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
MSX1P28360 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC17.88■□□□□ 0.45
MSX1P28360 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC17.88■□□□□ 0.45
MSX1P28360 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.88■□□□□ 0.45
MSX1P28360 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.88■□□□□ 0.45
MSX1P28360 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
MSX1P28360 AC110285.5-201ENST00000611501 352 ntBASIC17.88■□□□□ 0.45
MSX1P28360 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
MSX1P28360 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC17.88■□□□□ 0.45
MSX1P28360 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.88■□□□□ 0.45
MSX1P28360 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
MSX1P28360 AC073130.3-201ENST00000624389 2278 ntBASIC17.88■□□□□ 0.45
MSX1P28360 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
MSX1P28360 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSX1P28360 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC17.88■□□□□ 0.45
MSX1P28360 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC17.88■□□□□ 0.45
MSX1P28360 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
MSX1P28360 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSX1P28360 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC17.88■□□□□ 0.45
MSX1P28360 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC17.88■□□□□ 0.45
MSX1P28360 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSX1P28360 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC17.87■□□□□ 0.45
MSX1P28360 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC17.87■□□□□ 0.45
MSX1P28360 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC17.87■□□□□ 0.45
MSX1P28360 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
MSX1P28360 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
MSX1P28360 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC17.87■□□□□ 0.45
MSX1P28360 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
MSX1P28360 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
MSX1P28360 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSX1P28360 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
MSX1P28360 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.87■□□□□ 0.45
MSX1P28360 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSX1P28360 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSX1P28360 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
MSX1P28360 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC17.87■□□□□ 0.45
MSX1P28360 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC17.87■□□□□ 0.45
MSX1P28360 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC17.87■□□□□ 0.45
MSX1P28360 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.87■□□□□ 0.45
MSX1P28360 TK2-204ENST00000525974 1178 ntTSL 2 BASIC17.87■□□□□ 0.45
MSX1P28360 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
MSX1P28360 MIR4785-201ENST00000585005 73 ntBASIC17.87■□□□□ 0.45
MSX1P28360 AC010331.1-201ENST00000611423 582 ntBASIC17.87■□□□□ 0.45
MSX1P28360 Six3os1_6.1-201ENST00000620790 196 ntBASIC17.87■□□□□ 0.45
MSX1P28360 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
MSX1P28360 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC17.87■□□□□ 0.45
MSX1P28360 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
MSX1P28360 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC17.87■□□□□ 0.45
MSX1P28360 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSX1P28360 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSX1P28360 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
MSX1P28360 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.87■□□□□ 0.45
MSX1P28360 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC17.87■□□□□ 0.45
MSX1P28360 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
MSX1P28360 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC17.86■□□□□ 0.45
MSX1P28360 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSX1P28360 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
MSX1P28360 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSX1P28360 ME2-218ENST00000640965 2476 ntTSL 5 BASIC17.86■□□□□ 0.45
MSX1P28360 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
MSX1P28360 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
MSX1P28360 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
MSX1P28360 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.86■□□□□ 0.45
MSX1P28360 KRASP1-201ENST00000407852 552 ntBASIC17.86■□□□□ 0.45
MSX1P28360 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSX1P28360 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC17.86■□□□□ 0.45
MSX1P28360 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
MSX1P28360 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC17.86■□□□□ 0.45
MSX1P28360 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC17.86■□□□□ 0.45
MSX1P28360 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
MSX1P28360 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSX1P28360 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
MSX1P28360 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC17.86■□□□□ 0.45
MSX1P28360 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC17.86■□□□□ 0.45
MSX1P28360 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
MSX1P28360 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSX1P28360 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC17.85■□□□□ 0.45
MSX1P28360 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSX1P28360 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
MSX1P28360 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSX1P28360 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSX1P28360 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC17.85■□□□□ 0.45
MSX1P28360 TUBB8P6-201ENST00000436895 1288 ntBASIC17.85■□□□□ 0.45
MSX1P28360 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.85■□□□□ 0.45
MSX1P28360 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.85■□□□□ 0.45
MSX1P28360 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC17.85■□□□□ 0.45
MSX1P28360 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSX1P28360 KRT18P16-201ENST00000510337 1294 ntBASIC17.85■□□□□ 0.45
MSX1P28360 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
MSX1P28360 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
MSX1P28360 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms