Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC23.95■■□□□ 1.42
COL4A1P02462 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.42
COL4A1P02462 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
COL4A1P02462 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
COL4A1P02462 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
COL4A1P02462 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
COL4A1P02462 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC23.95■■□□□ 1.42
COL4A1P02462 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
COL4A1P02462 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC23.95■■□□□ 1.42
COL4A1P02462 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC23.95■■□□□ 1.42
COL4A1P02462 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
COL4A1P02462 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
COL4A1P02462 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC23.94■■□□□ 1.42
COL4A1P02462 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
COL4A1P02462 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
COL4A1P02462 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
COL4A1P02462 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
COL4A1P02462 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC23.94■■□□□ 1.42
COL4A1P02462 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC23.94■■□□□ 1.42
COL4A1P02462 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC23.94■■□□□ 1.42
COL4A1P02462 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC23.94■■□□□ 1.42
COL4A1P02462 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC23.94■■□□□ 1.42
COL4A1P02462 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC23.94■■□□□ 1.42
COL4A1P02462 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC23.94■■□□□ 1.42
COL4A1P02462 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC23.94■■□□□ 1.42
COL4A1P02462 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
COL4A1P02462 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
COL4A1P02462 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
COL4A1P02462 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
COL4A1P02462 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
COL4A1P02462 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC23.93■■□□□ 1.42
COL4A1P02462 AP003041.3-201ENST00000527151 707 ntBASIC23.93■■□□□ 1.42
COL4A1P02462 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC23.93■■□□□ 1.42
COL4A1P02462 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC23.93■■□□□ 1.42
COL4A1P02462 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
COL4A1P02462 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC23.93■■□□□ 1.42
COL4A1P02462 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC23.93■■□□□ 1.42
COL4A1P02462 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
COL4A1P02462 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.42
COL4A1P02462 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC23.93■■□□□ 1.42
COL4A1P02462 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC23.93■■□□□ 1.42
COL4A1P02462 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC23.93■■□□□ 1.42
COL4A1P02462 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
COL4A1P02462 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC23.93■■□□□ 1.42
COL4A1P02462 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC23.93■■□□□ 1.42
COL4A1P02462 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC23.93■■□□□ 1.42
COL4A1P02462 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
COL4A1P02462 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
COL4A1P02462 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
COL4A1P02462 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC23.92■■□□□ 1.42
COL4A1P02462 AC141257.4-201ENST00000634557 245 ntBASIC23.92■■□□□ 1.42
COL4A1P02462 AC136944.6-201ENST00000634818 245 ntBASIC23.92■■□□□ 1.42
COL4A1P02462 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC23.92■■□□□ 1.42
COL4A1P02462 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
COL4A1P02462 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
COL4A1P02462 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
COL4A1P02462 AC099778.1-201ENST00000568593 1911 ntBASIC23.92■■□□□ 1.42
COL4A1P02462 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC23.92■■□□□ 1.42
COL4A1P02462 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
COL4A1P02462 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC23.92■■□□□ 1.42
COL4A1P02462 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
COL4A1P02462 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
COL4A1P02462 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC23.92■■□□□ 1.42
COL4A1P02462 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC23.92■■□□□ 1.42
COL4A1P02462 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC23.92■■□□□ 1.42
COL4A1P02462 KRT18P38-201ENST00000449496 1282 ntBASIC23.92■■□□□ 1.42
COL4A1P02462 AL359075.1-203ENST00000462729 1002 ntBASIC23.92■■□□□ 1.42
COL4A1P02462 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
COL4A1P02462 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
COL4A1P02462 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC23.92■■□□□ 1.42
COL4A1P02462 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL4A1P02462 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL4A1P02462 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
COL4A1P02462 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL4A1P02462 KRT8P11-201ENST00000409686 1436 ntBASIC23.91■■□□□ 1.42
COL4A1P02462 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC23.91■■□□□ 1.42
COL4A1P02462 SLC25A1P2-201ENST00000430693 912 ntBASIC23.91■■□□□ 1.42
COL4A1P02462 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC23.91■■□□□ 1.42
COL4A1P02462 AL441883.1-201ENST00000566170 1045 ntBASIC23.91■■□□□ 1.42
COL4A1P02462 AC010653.2-201ENST00000623505 997 ntBASIC23.91■■□□□ 1.42
COL4A1P02462 AL023973.1-201ENST00000624619 620 ntBASIC23.91■■□□□ 1.42
COL4A1P02462 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL4A1P02462 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC23.91■■□□□ 1.42
COL4A1P02462 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
COL4A1P02462 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC23.9■■□□□ 1.42
COL4A1P02462 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
COL4A1P02462 BET1L-202ENST00000332865 533 ntTSL 5 BASIC23.9■■□□□ 1.42
COL4A1P02462 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
COL4A1P02462 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC23.9■■□□□ 1.42
COL4A1P02462 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
COL4A1P02462 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC23.9■■□□□ 1.42
COL4A1P02462 CKBP1-201ENST00000565489 1086 ntBASIC23.9■■□□□ 1.42
COL4A1P02462 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC23.9■■□□□ 1.42
COL4A1P02462 AC083849.1-201ENST00000615227 514 ntBASIC23.9■■□□□ 1.42
COL4A1P02462 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
COL4A1P02462 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
COL4A1P02462 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC23.9■■□□□ 1.42
COL4A1P02462 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC23.9■■□□□ 1.42
COL4A1P02462 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
COL4A1P02462 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC23.9■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms