Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
SIX3O95343 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.05■□□□□ 0.64
SIX3O95343 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SIX3O95343 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
SIX3O95343 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SIX3O95343 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.05■□□□□ 0.64
SIX3O95343 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SIX3O95343 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SIX3O95343 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SIX3O95343 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.05■□□□□ 0.64
SIX3O95343 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
SIX3O95343 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.05■□□□□ 0.64
SIX3O95343 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.05■□□□□ 0.64
SIX3O95343 RPS2P52-201ENST00000469610 820 ntBASIC19.05■□□□□ 0.64
SIX3O95343 RHEB-204ENST00000472642 900 ntTSL 3 BASIC19.05■□□□□ 0.64
SIX3O95343 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC19.05■□□□□ 0.64
SIX3O95343 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
SIX3O95343 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
SIX3O95343 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SIX3O95343 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SIX3O95343 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SIX3O95343 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
SIX3O95343 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
SIX3O95343 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SIX3O95343 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
SIX3O95343 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SIX3O95343 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SIX3O95343 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SIX3O95343 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SIX3O95343 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SIX3O95343 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
SIX3O95343 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.04■□□□□ 0.64
SIX3O95343 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
SIX3O95343 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
SIX3O95343 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
SIX3O95343 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SIX3O95343 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SIX3O95343 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC19.04■□□□□ 0.64
SIX3O95343 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.04■□□□□ 0.64
SIX3O95343 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SIX3O95343 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.04■□□□□ 0.64
SIX3O95343 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
SIX3O95343 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19.04■□□□□ 0.64
SIX3O95343 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.04■□□□□ 0.64
SIX3O95343 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.04■□□□□ 0.64
SIX3O95343 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SIX3O95343 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.04■□□□□ 0.64
SIX3O95343 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SIX3O95343 MYC-209ENST00000641252 345 ntBASIC19.04■□□□□ 0.64
SIX3O95343 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SIX3O95343 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SIX3O95343 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SIX3O95343 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SIX3O95343 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
SIX3O95343 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
SIX3O95343 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
SIX3O95343 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.04■□□□□ 0.64
SIX3O95343 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
SIX3O95343 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
SIX3O95343 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
SIX3O95343 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
SIX3O95343 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SIX3O95343 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.03■□□□□ 0.64
SIX3O95343 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC19.03■□□□□ 0.64
SIX3O95343 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SIX3O95343 AC092368.3-202ENST00000574180 1591 ntBASIC19.03■□□□□ 0.64
SIX3O95343 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
SIX3O95343 AC093503.3-201ENST00000624917 2352 ntBASIC19.03■□□□□ 0.64
SIX3O95343 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SIX3O95343 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SIX3O95343 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.03■□□□□ 0.64
SIX3O95343 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.03■□□□□ 0.64
SIX3O95343 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC19.03■□□□□ 0.64
SIX3O95343 AL138781.1-201ENST00000566567 1274 ntBASIC19.03■□□□□ 0.64
SIX3O95343 MIR4758-201ENST00000577688 71 ntBASIC19.03■□□□□ 0.64
SIX3O95343 GXYLT1P5-201ENST00000614548 1189 ntBASIC19.03■□□□□ 0.64
SIX3O95343 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SIX3O95343 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.03■□□□□ 0.64
SIX3O95343 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.03■□□□□ 0.64
SIX3O95343 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SIX3O95343 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
SIX3O95343 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
SIX3O95343 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
SIX3O95343 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
SIX3O95343 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.03■□□□□ 0.64
SIX3O95343 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
SIX3O95343 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SIX3O95343 LINC01465-201ENST00000408887 1940 ntBASIC19.02■□□□□ 0.64
SIX3O95343 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SIX3O95343 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SIX3O95343 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SIX3O95343 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SIX3O95343 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SIX3O95343 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SIX3O95343 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
SIX3O95343 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC19.02■□□□□ 0.64
SIX3O95343 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.02■□□□□ 0.64
SIX3O95343 AC097658.1-201ENST00000475555 843 ntBASIC19.02■□□□□ 0.64
SIX3O95343 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
SIX3O95343 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms