Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
MBD4O95243 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
MBD4O95243 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
MBD4O95243 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC23.34■■□□□ 1.33
MBD4O95243 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC23.33■■□□□ 1.33
MBD4O95243 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC23.33■■□□□ 1.33
MBD4O95243 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.33
MBD4O95243 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
MBD4O95243 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC23.33■■□□□ 1.33
MBD4O95243 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC23.33■■□□□ 1.33
MBD4O95243 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC23.33■■□□□ 1.33
MBD4O95243 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
MBD4O95243 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
MBD4O95243 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
MBD4O95243 NME1-207ENST00000480143 964 ntTSL 2 BASIC23.33■■□□□ 1.33
MBD4O95243 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC23.33■■□□□ 1.33
MBD4O95243 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC23.33■■□□□ 1.33
MBD4O95243 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC23.33■■□□□ 1.33
MBD4O95243 DECR2-212ENST00000627716 352 ntTSL 2 BASIC23.33■■□□□ 1.33
MBD4O95243 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
MBD4O95243 LINC01465-201ENST00000408887 1940 ntBASIC23.33■■□□□ 1.32
MBD4O95243 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
MBD4O95243 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
MBD4O95243 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
MBD4O95243 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
MBD4O95243 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC23.32■■□□□ 1.32
MBD4O95243 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
MBD4O95243 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
MBD4O95243 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
MBD4O95243 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
MBD4O95243 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
MBD4O95243 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
MBD4O95243 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC23.32■■□□□ 1.32
MBD4O95243 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
MBD4O95243 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC23.32■■□□□ 1.32
MBD4O95243 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
MBD4O95243 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC23.32■■□□□ 1.32
MBD4O95243 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
MBD4O95243 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
MBD4O95243 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC23.31■■□□□ 1.32
MBD4O95243 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
MBD4O95243 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
MBD4O95243 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
MBD4O95243 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC23.31■■□□□ 1.32
MBD4O95243 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC23.31■■□□□ 1.32
MBD4O95243 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC23.31■■□□□ 1.32
MBD4O95243 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC23.31■■□□□ 1.32
MBD4O95243 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
MBD4O95243 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC23.31■■□□□ 1.32
MBD4O95243 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC23.31■■□□□ 1.32
MBD4O95243 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC23.31■■□□□ 1.32
MBD4O95243 AL031985.4-201ENST00000642138 673 ntBASIC23.31■■□□□ 1.32
MBD4O95243 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC23.31■■□□□ 1.32
MBD4O95243 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC23.31■■□□□ 1.32
MBD4O95243 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC23.31■■□□□ 1.32
MBD4O95243 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC23.31■■□□□ 1.32
MBD4O95243 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC23.31■■□□□ 1.32
MBD4O95243 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
MBD4O95243 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC23.3■■□□□ 1.32
MBD4O95243 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
MBD4O95243 AC073130.3-201ENST00000624389 2278 ntBASIC23.3■■□□□ 1.32
MBD4O95243 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
MBD4O95243 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC23.3■■□□□ 1.32
MBD4O95243 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
MBD4O95243 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
MBD4O95243 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
MBD4O95243 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
MBD4O95243 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC23.3■■□□□ 1.32
MBD4O95243 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC23.3■■□□□ 1.32
MBD4O95243 MESTP1-201ENST00000404287 994 ntBASIC23.3■■□□□ 1.32
MBD4O95243 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
MBD4O95243 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
MBD4O95243 GXYLT1P3-201ENST00000453058 1193 ntBASIC23.3■■□□□ 1.32
MBD4O95243 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
MBD4O95243 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC23.3■■□□□ 1.32
MBD4O95243 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC23.3■■□□□ 1.32
MBD4O95243 BX088651.1-201ENST00000540551 451 ntBASIC23.3■■□□□ 1.32
MBD4O95243 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
MBD4O95243 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
MBD4O95243 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
MBD4O95243 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
MBD4O95243 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC23.3■■□□□ 1.32
MBD4O95243 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
MBD4O95243 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC23.3■■□□□ 1.32
MBD4O95243 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
MBD4O95243 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC23.29■■□□□ 1.32
MBD4O95243 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
MBD4O95243 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
MBD4O95243 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
MBD4O95243 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
MBD4O95243 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC23.29■■□□□ 1.32
MBD4O95243 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
MBD4O95243 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
MBD4O95243 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
MBD4O95243 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
MBD4O95243 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC23.29■■□□□ 1.32
MBD4O95243 AC116562.2-201ENST00000507042 360 ntBASIC23.29■■□□□ 1.32
MBD4O95243 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
MBD4O95243 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC23.29■■□□□ 1.32
MBD4O95243 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC23.29■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms