Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1BO60663 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1BO60663 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1BO60663 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1BO60663 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1BO60663 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC17.13■□□□□ 0.33
LMX1BO60663 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1BO60663 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1BO60663 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
LMX1BO60663 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC17.13■□□□□ 0.33
LMX1BO60663 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.13■□□□□ 0.33
LMX1BO60663 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC17.13■□□□□ 0.33
LMX1BO60663 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.13■□□□□ 0.33
LMX1BO60663 HLA-B-256ENST00000639848 1089 ntBASIC17.13■□□□□ 0.33
LMX1BO60663 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC17.13■□□□□ 0.33
LMX1BO60663 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC17.13■□□□□ 0.33
LMX1BO60663 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1BO60663 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
LMX1BO60663 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1BO60663 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1BO60663 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1BO60663 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC17.12■□□□□ 0.33
LMX1BO60663 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1BO60663 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
LMX1BO60663 AP001271.2-201ENST00000624018 1556 ntBASIC17.12■□□□□ 0.33
LMX1BO60663 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1BO60663 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1BO60663 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1BO60663 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1BO60663 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1BO60663 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC17.12■□□□□ 0.33
LMX1BO60663 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC17.12■□□□□ 0.33
LMX1BO60663 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
LMX1BO60663 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1BO60663 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.12■□□□□ 0.33
LMX1BO60663 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC17.12■□□□□ 0.33
LMX1BO60663 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1BO60663 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
LMX1BO60663 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1BO60663 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1BO60663 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
LMX1BO60663 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1BO60663 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1BO60663 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1BO60663 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC17.12■□□□□ 0.33
LMX1BO60663 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
LMX1BO60663 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1BO60663 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1BO60663 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
LMX1BO60663 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1BO60663 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1BO60663 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LMX1BO60663 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LMX1BO60663 PHGDH-210ENST00000641115 1638 ntBASIC17.11■□□□□ 0.33
LMX1BO60663 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LMX1BO60663 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.11■□□□□ 0.33
LMX1BO60663 AL032819.2-201ENST00000624543 2162 ntBASIC17.11■□□□□ 0.33
LMX1BO60663 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC17.11■□□□□ 0.33
LMX1BO60663 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.11■□□□□ 0.33
LMX1BO60663 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
LMX1BO60663 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LMX1BO60663 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LMX1BO60663 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LMX1BO60663 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
LMX1BO60663 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LMX1BO60663 KRT17P3-201ENST00000420566 1262 ntBASIC17.11■□□□□ 0.33
LMX1BO60663 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC17.11■□□□□ 0.33
LMX1BO60663 C2orf69P4-201ENST00000565394 541 ntBASIC17.11■□□□□ 0.33
LMX1BO60663 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LMX1BO60663 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC17.11■□□□□ 0.33
LMX1BO60663 AC008403.3-201ENST00000598924 454 ntBASIC17.11■□□□□ 0.33
LMX1BO60663 AL589743.5-201ENST00000616611 1050 ntBASIC17.11■□□□□ 0.33
LMX1BO60663 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LMX1BO60663 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LMX1BO60663 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
LMX1BO60663 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LMX1BO60663 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
LMX1BO60663 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LMX1BO60663 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LMX1BO60663 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
LMX1BO60663 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
LMX1BO60663 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
LMX1BO60663 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LMX1BO60663 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
LMX1BO60663 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LMX1BO60663 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC17.1■□□□□ 0.33
LMX1BO60663 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.1■□□□□ 0.33
LMX1BO60663 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LMX1BO60663 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
LMX1BO60663 HLA-G-202ENST00000376815 851 ntBASIC17.1■□□□□ 0.33
LMX1BO60663 HLA-G-203ENST00000376818 1127 ntBASIC17.1■□□□□ 0.33
LMX1BO60663 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LMX1BO60663 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LMX1BO60663 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC17.1■□□□□ 0.33
LMX1BO60663 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.1■□□□□ 0.33
LMX1BO60663 BRWD1-AS2-201ENST00000603064 1028 ntBASIC17.1■□□□□ 0.33
LMX1BO60663 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
LMX1BO60663 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC17.1■□□□□ 0.33
LMX1BO60663 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LMX1BO60663 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms