Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 AC009237.14-201ENST00000609975 1594 ntBASIC18.17■□□□□ 0.5
PRKNO60260 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PRKNO60260 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PRKNO60260 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
PRKNO60260 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
PRKNO60260 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PRKNO60260 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.17■□□□□ 0.5
PRKNO60260 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PRKNO60260 TMEM179-206ENST00000616017 1645 ntBASIC18.17■□□□□ 0.5
PRKNO60260 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.17■□□□□ 0.5
PRKNO60260 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
PRKNO60260 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PRKNO60260 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.17■□□□□ 0.5
PRKNO60260 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.17■□□□□ 0.5
PRKNO60260 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.17■□□□□ 0.5
PRKNO60260 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.17■□□□□ 0.5
PRKNO60260 KRT18P16-201ENST00000510337 1294 ntBASIC18.17■□□□□ 0.5
PRKNO60260 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.17■□□□□ 0.5
PRKNO60260 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PRKNO60260 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.17■□□□□ 0.5
PRKNO60260 AL049637.2-201ENST00000641778 930 ntBASIC18.17■□□□□ 0.5
PRKNO60260 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
PRKNO60260 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PRKNO60260 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.17■□□□□ 0.5
PRKNO60260 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.17■□□□□ 0.5
PRKNO60260 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.17■□□□□ 0.5
PRKNO60260 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.17■□□□□ 0.5
PRKNO60260 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.17■□□□□ 0.5
PRKNO60260 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PRKNO60260 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.17■□□□□ 0.5
PRKNO60260 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.17■□□□□ 0.5
PRKNO60260 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PRKNO60260 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PRKNO60260 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
PRKNO60260 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
PRKNO60260 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PRKNO60260 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PRKNO60260 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PRKNO60260 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PRKNO60260 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
PRKNO60260 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
PRKNO60260 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PRKNO60260 TSPY7P-201ENST00000431358 1114 ntBASIC18.16■□□□□ 0.5
PRKNO60260 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC18.16■□□□□ 0.5
PRKNO60260 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.16■□□□□ 0.5
PRKNO60260 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PRKNO60260 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PRKNO60260 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.16■□□□□ 0.5
PRKNO60260 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.16■□□□□ 0.5
PRKNO60260 AF186192.3-201ENST00000583427 947 ntBASIC18.16■□□□□ 0.5
PRKNO60260 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
PRKNO60260 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.16■□□□□ 0.5
PRKNO60260 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PRKNO60260 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PRKNO60260 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
PRKNO60260 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PRKNO60260 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC18.16■□□□□ 0.5
PRKNO60260 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
PRKNO60260 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PRKNO60260 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PRKNO60260 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
PRKNO60260 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.16■□□□□ 0.5
PRKNO60260 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PRKNO60260 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PRKNO60260 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PRKNO60260 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PRKNO60260 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PRKNO60260 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PRKNO60260 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.15■□□□□ 0.5
PRKNO60260 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PRKNO60260 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
PRKNO60260 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PRKNO60260 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PRKNO60260 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.15■□□□□ 0.5
PRKNO60260 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.15■□□□□ 0.5
PRKNO60260 MIR4497-201ENST00000583208 89 ntBASIC18.15■□□□□ 0.5
PRKNO60260 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC18.15■□□□□ 0.5
PRKNO60260 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.15■□□□□ 0.5
PRKNO60260 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
PRKNO60260 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
PRKNO60260 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PRKNO60260 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
PRKNO60260 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PRKNO60260 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
PRKNO60260 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
PRKNO60260 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PRKNO60260 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PRKNO60260 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
PRKNO60260 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.14■□□□□ 0.49
PRKNO60260 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.14■□□□□ 0.49
PRKNO60260 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.14■□□□□ 0.49
PRKNO60260 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.14■□□□□ 0.49
PRKNO60260 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PRKNO60260 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.14■□□□□ 0.49
PRKNO60260 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.14■□□□□ 0.49
PRKNO60260 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.14■□□□□ 0.49
PRKNO60260 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PRKNO60260 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PRKNO60260 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PRKNO60260 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms