Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC15.69■□□□□ 0.1
HMGB3O15347 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HMGB3O15347 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HMGB3O15347 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC15.69■□□□□ 0.1
HMGB3O15347 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HMGB3O15347 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HMGB3O15347 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGB3O15347 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HMGB3O15347 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC15.68■□□□□ 0.1
HMGB3O15347 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGB3O15347 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGB3O15347 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGB3O15347 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HMGB3O15347 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC15.68■□□□□ 0.1
HMGB3O15347 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
HMGB3O15347 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC15.68■□□□□ 0.1
HMGB3O15347 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HMGB3O15347 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC15.68■□□□□ 0.1
HMGB3O15347 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGB3O15347 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HMGB3O15347 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC15.68■□□□□ 0.1
HMGB3O15347 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGB3O15347 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGB3O15347 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGB3O15347 BX842568.3-201ENST00000418104 571 ntBASIC15.68■□□□□ 0.1
HMGB3O15347 TRIR-202ENST00000588213 841 ntTSL 3 BASIC15.68■□□□□ 0.1
HMGB3O15347 MIR4466-201ENST00000606121 54 ntBASIC15.68■□□□□ 0.1
HMGB3O15347 SF1-220ENST00000626028 704 ntTSL 2 BASIC15.68■□□□□ 0.1
HMGB3O15347 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HMGB3O15347 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGB3O15347 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGB3O15347 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
HMGB3O15347 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGB3O15347 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
HMGB3O15347 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGB3O15347 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HMGB3O15347 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
HMGB3O15347 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC15.68■□□□□ 0.1
HMGB3O15347 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGB3O15347 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC15.68■□□□□ 0.1
HMGB3O15347 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
HMGB3O15347 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
HMGB3O15347 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
HMGB3O15347 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB3O15347 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB3O15347 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC15.67■□□□□ 0.1
HMGB3O15347 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB3O15347 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB3O15347 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC15.67■□□□□ 0.1
HMGB3O15347 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB3O15347 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC15.67■□□□□ 0.1
HMGB3O15347 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB3O15347 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB3O15347 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB3O15347 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB3O15347 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
HMGB3O15347 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB3O15347 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
HMGB3O15347 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB3O15347 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC15.67■□□□□ 0.1
HMGB3O15347 AL049812.1-201ENST00000432563 2267 ntBASIC15.66■□□□□ 0.1
HMGB3O15347 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC15.66■□□□□ 0.1
HMGB3O15347 AL032819.2-201ENST00000624543 2162 ntBASIC15.66■□□□□ 0.1
HMGB3O15347 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB3O15347 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC15.66■□□□□ 0.1
HMGB3O15347 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
HMGB3O15347 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB3O15347 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB3O15347 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
HMGB3O15347 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB3O15347 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB3O15347 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
HMGB3O15347 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
HMGB3O15347 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC15.66■□□□□ 0.1
HMGB3O15347 IGHV3-19-201ENST00000521488 291 ntBASIC15.66■□□□□ 0.1
HMGB3O15347 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB3O15347 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC15.66■□□□□ 0.1
HMGB3O15347 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC15.66■□□□□ 0.1
HMGB3O15347 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB3O15347 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC15.66■□□□□ 0.1
HMGB3O15347 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB3O15347 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB3O15347 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC15.66■□□□□ 0.1
HMGB3O15347 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB3O15347 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC15.66■□□□□ 0.1
HMGB3O15347 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB3O15347 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB3O15347 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC15.66■□□□□ 0.1
HMGB3O15347 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15.66■□□□□ 0.1
HMGB3O15347 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB3O15347 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC15.66■□□□□ 0.1
HMGB3O15347 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB3O15347 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB3O15347 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC15.66■□□□□ 0.1
HMGB3O15347 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB3O15347 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB3O15347 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HMGB3O15347 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
HMGB3O15347 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
HMGB3O15347 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms