Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
SMKR1H3BMG3 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 AC010141.2-201ENST00000452426 721 ntBASIC14.25□□□□□ -0.13
SMKR1H3BMG3 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 FGF8-207ENST00000618991 856 ntTSL 3 BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
SMKR1H3BMG3 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 AC135279.3-201ENST00000610945 1311 ntBASIC14.24□□□□□ -0.13
SMKR1H3BMG3 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 NT5C3AP1-201ENST00000394500 1012 ntBASIC14.24□□□□□ -0.13
SMKR1H3BMG3 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
SMKR1H3BMG3 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
SMKR1H3BMG3 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
SMKR1H3BMG3 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SMKR1H3BMG3 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
SMKR1H3BMG3 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
SMKR1H3BMG3 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC14.23□□□□□ -0.13
SMKR1H3BMG3 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC14.23□□□□□ -0.13
SMKR1H3BMG3 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms