Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
VPS35Q96QK1 DUX4L11-201ENST00000611504 1267 ntBASIC25.48■■□□□ 1.67
VPS35Q96QK1 DUX4L12-201ENST00000614593 1267 ntBASIC25.48■■□□□ 1.67
VPS35Q96QK1 DUX4L14-201ENST00000621227 1267 ntBASIC25.48■■□□□ 1.67
VPS35Q96QK1 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC25.47■■□□□ 1.67
VPS35Q96QK1 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
VPS35Q96QK1 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
VPS35Q96QK1 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
VPS35Q96QK1 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC25.46■■□□□ 1.67
VPS35Q96QK1 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC25.46■■□□□ 1.67
VPS35Q96QK1 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC25.46■■□□□ 1.67
VPS35Q96QK1 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC25.46■■□□□ 1.67
VPS35Q96QK1 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC25.46■■□□□ 1.67
VPS35Q96QK1 MEST-211ENST00000437945 1455 ntTSL 5 BASIC25.46■■□□□ 1.67
VPS35Q96QK1 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
VPS35Q96QK1 ABCB10P3-201ENST00000561950 2166 ntBASIC25.45■■□□□ 1.67
VPS35Q96QK1 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC25.45■■□□□ 1.66
VPS35Q96QK1 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
VPS35Q96QK1 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC25.45■■□□□ 1.66
VPS35Q96QK1 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC25.44■■□□□ 1.66
VPS35Q96QK1 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
VPS35Q96QK1 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC25.43■■□□□ 1.66
VPS35Q96QK1 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC25.43■■□□□ 1.66
VPS35Q96QK1 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
VPS35Q96QK1 DUX4L13-201ENST00000554103 1267 ntBASIC25.42■■□□□ 1.66
VPS35Q96QK1 DUX4L15-201ENST00000611059 1267 ntBASIC25.42■■□□□ 1.66
VPS35Q96QK1 DUX4L23-201ENST00000615195 1269 ntBASIC25.42■■□□□ 1.66
VPS35Q96QK1 DUX4L24-201ENST00000617576 1269 ntBASIC25.42■■□□□ 1.66
VPS35Q96QK1 DUX4L22-201ENST00000618238 1269 ntBASIC25.42■■□□□ 1.66
VPS35Q96QK1 DUX4L20-201ENST00000619712 1269 ntBASIC25.42■■□□□ 1.66
VPS35Q96QK1 DUX4L21-201ENST00000622058 1269 ntBASIC25.42■■□□□ 1.66
VPS35Q96QK1 DUX4L10-201ENST00000622460 1267 ntBASIC25.42■■□□□ 1.66
VPS35Q96QK1 DUX4L25-201ENST00000624915 1269 ntBASIC25.42■■□□□ 1.66
VPS35Q96QK1 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
VPS35Q96QK1 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC25.42■■□□□ 1.66
VPS35Q96QK1 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
VPS35Q96QK1 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC25.41■■□□□ 1.66
VPS35Q96QK1 RNF166-209ENST00000567844 633 ntTSL 5 BASIC25.41■■□□□ 1.66
VPS35Q96QK1 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
VPS35Q96QK1 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
VPS35Q96QK1 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC25.41■■□□□ 1.66
VPS35Q96QK1 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
VPS35Q96QK1 AGPS-202ENST00000409888 815 ntTSL 4 BASIC25.4■■□□□ 1.66
VPS35Q96QK1 MACF1-219ENST00000484793 834 ntTSL 2 BASIC25.4■■□□□ 1.66
VPS35Q96QK1 CHML-204ENST00000638121 920 ntTSL 2 BASIC25.4■■□□□ 1.66
VPS35Q96QK1 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
VPS35Q96QK1 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
VPS35Q96QK1 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC25.39■■□□□ 1.66
VPS35Q96QK1 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC25.39■■□□□ 1.66
VPS35Q96QK1 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC25.39■■□□□ 1.65
VPS35Q96QK1 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC25.39■■□□□ 1.65
VPS35Q96QK1 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC25.38■■□□□ 1.65
VPS35Q96QK1 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
VPS35Q96QK1 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC25.38■■□□□ 1.65
VPS35Q96QK1 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC25.38■■□□□ 1.65
VPS35Q96QK1 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC25.38■■□□□ 1.65
VPS35Q96QK1 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
VPS35Q96QK1 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC25.38■■□□□ 1.65
VPS35Q96QK1 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC25.37■■□□□ 1.65
VPS35Q96QK1 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC25.36■■□□□ 1.65
VPS35Q96QK1 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
VPS35Q96QK1 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
VPS35Q96QK1 PVT1-219ENST00000523427 938 ntTSL 3 BASIC25.36■■□□□ 1.65
VPS35Q96QK1 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC25.36■■□□□ 1.65
VPS35Q96QK1 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC25.36■■□□□ 1.65
VPS35Q96QK1 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
VPS35Q96QK1 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC25.35■■□□□ 1.65
VPS35Q96QK1 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC25.35■■□□□ 1.65
VPS35Q96QK1 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
VPS35Q96QK1 AC100797.4-201ENST00000631653 1827 ntBASIC25.34■■□□□ 1.65
VPS35Q96QK1 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
VPS35Q96QK1 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC25.33■■□□□ 1.65
VPS35Q96QK1 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC25.33■■□□□ 1.65
VPS35Q96QK1 CR559946.2-201ENST00000623684 991 ntBASIC25.33■■□□□ 1.65
VPS35Q96QK1 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC25.33■■□□□ 1.65
VPS35Q96QK1 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC25.33■■□□□ 1.64
VPS35Q96QK1 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
VPS35Q96QK1 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
VPS35Q96QK1 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC25.32■■□□□ 1.64
VPS35Q96QK1 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC25.32■■□□□ 1.64
VPS35Q96QK1 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC25.32■■□□□ 1.64
VPS35Q96QK1 MIR3648-2-201ENST00000581792 180 ntBASIC25.32■■□□□ 1.64
VPS35Q96QK1 MIR3648-1-201ENST00000615959 180 ntBASIC25.32■■□□□ 1.64
VPS35Q96QK1 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
VPS35Q96QK1 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
VPS35Q96QK1 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
VPS35Q96QK1 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC25.31■■□□□ 1.64
VPS35Q96QK1 GDI1-215ENST00000630693 786 ntTSL 4 BASIC25.31■■□□□ 1.64
VPS35Q96QK1 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
VPS35Q96QK1 AC139426.1-201ENST00000568218 2529 ntBASIC25.3■■□□□ 1.64
VPS35Q96QK1 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC25.3■■□□□ 1.64
VPS35Q96QK1 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC25.3■■□□□ 1.64
VPS35Q96QK1 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
VPS35Q96QK1 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC25.29■■□□□ 1.64
VPS35Q96QK1 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
VPS35Q96QK1 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
VPS35Q96QK1 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
VPS35Q96QK1 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC25.27■■□□□ 1.64
VPS35Q96QK1 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
VPS35Q96QK1 AC110285.7-201ENST00000624417 1536 ntBASIC25.27■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms