Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC25.48■■□□□ 1.67
XRCC1P18887 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
XRCC1P18887 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
XRCC1P18887 AC142086.6-201ENST00000621154 1765 ntBASIC25.47■■□□□ 1.67
XRCC1P18887 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC25.47■■□□□ 1.67
XRCC1P18887 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC25.47■■□□□ 1.67
XRCC1P18887 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
XRCC1P18887 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
XRCC1P18887 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
XRCC1P18887 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
XRCC1P18887 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC25.45■■□□□ 1.67
XRCC1P18887 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
XRCC1P18887 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
XRCC1P18887 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC25.44■■□□□ 1.66
XRCC1P18887 LINC01971-201ENST00000617888 1048 ntBASIC25.44■■□□□ 1.66
XRCC1P18887 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC25.44■■□□□ 1.66
XRCC1P18887 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC25.43■■□□□ 1.66
XRCC1P18887 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
XRCC1P18887 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC25.43■■□□□ 1.66
XRCC1P18887 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
XRCC1P18887 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
XRCC1P18887 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC25.42■■□□□ 1.66
XRCC1P18887 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC25.42■■□□□ 1.66
XRCC1P18887 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC25.41■■□□□ 1.66
XRCC1P18887 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC25.41■■□□□ 1.66
XRCC1P18887 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC25.41■■□□□ 1.66
XRCC1P18887 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC25.4■■□□□ 1.66
XRCC1P18887 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
XRCC1P18887 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC25.38■■□□□ 1.65
XRCC1P18887 CALM3-209ENST00000597743 577 ntTSL 4 BASIC25.38■■□□□ 1.65
XRCC1P18887 DUX4L11-201ENST00000611504 1267 ntBASIC25.38■■□□□ 1.65
XRCC1P18887 DUX4L12-201ENST00000614593 1267 ntBASIC25.38■■□□□ 1.65
XRCC1P18887 DUX4L14-201ENST00000621227 1267 ntBASIC25.38■■□□□ 1.65
XRCC1P18887 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
XRCC1P18887 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
XRCC1P18887 MACF1-219ENST00000484793 834 ntTSL 2 BASIC25.37■■□□□ 1.65
XRCC1P18887 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
XRCC1P18887 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC25.36■■□□□ 1.65
XRCC1P18887 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC25.36■■□□□ 1.65
XRCC1P18887 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
XRCC1P18887 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
XRCC1P18887 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
XRCC1P18887 HLA-V-202ENST00000446817 847 ntBASIC25.34■■□□□ 1.65
XRCC1P18887 RNF166-209ENST00000567844 633 ntTSL 5 BASIC25.34■■□□□ 1.65
XRCC1P18887 MBP-237ENST00000579129 1052 ntTSL 5 BASIC25.34■■□□□ 1.65
XRCC1P18887 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.65
XRCC1P18887 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.65
XRCC1P18887 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC25.33■■□□□ 1.65
XRCC1P18887 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC25.33■■□□□ 1.65
XRCC1P18887 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC25.33■■□□□ 1.65
XRCC1P18887 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
XRCC1P18887 LINC00273-201ENST00000539813 1452 ntBASIC25.33■■□□□ 1.65
XRCC1P18887 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
XRCC1P18887 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC25.32■■□□□ 1.64
XRCC1P18887 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
XRCC1P18887 AGPS-202ENST00000409888 815 ntTSL 4 BASIC25.32■■□□□ 1.64
XRCC1P18887 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC25.32■■□□□ 1.64
XRCC1P18887 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
XRCC1P18887 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
XRCC1P18887 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
XRCC1P18887 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
XRCC1P18887 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
XRCC1P18887 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC25.31■■□□□ 1.64
XRCC1P18887 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC25.31■■□□□ 1.64
XRCC1P18887 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC25.3■■□□□ 1.64
XRCC1P18887 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
XRCC1P18887 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC25.3■■□□□ 1.64
XRCC1P18887 MIR3648-2-201ENST00000581792 180 ntBASIC25.3■■□□□ 1.64
XRCC1P18887 MIR3648-1-201ENST00000615959 180 ntBASIC25.3■■□□□ 1.64
XRCC1P18887 AC127502.1-201ENST00000399971 1502 ntBASIC25.3■■□□□ 1.64
XRCC1P18887 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC25.29■■□□□ 1.64
XRCC1P18887 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
XRCC1P18887 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC25.28■■□□□ 1.64
XRCC1P18887 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC25.28■■□□□ 1.64
XRCC1P18887 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
XRCC1P18887 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
XRCC1P18887 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC25.28■■□□□ 1.64
XRCC1P18887 GDI1-215ENST00000630693 786 ntTSL 4 BASIC25.28■■□□□ 1.64
XRCC1P18887 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
XRCC1P18887 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC25.27■■□□□ 1.64
XRCC1P18887 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
XRCC1P18887 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
XRCC1P18887 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
XRCC1P18887 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
XRCC1P18887 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
XRCC1P18887 DUX4L13-201ENST00000554103 1267 ntBASIC25.25■■□□□ 1.63
XRCC1P18887 DUX4L15-201ENST00000611059 1267 ntBASIC25.25■■□□□ 1.63
XRCC1P18887 DUX4L23-201ENST00000615195 1269 ntBASIC25.25■■□□□ 1.63
XRCC1P18887 DUX4L24-201ENST00000617576 1269 ntBASIC25.25■■□□□ 1.63
XRCC1P18887 DUX4L22-201ENST00000618238 1269 ntBASIC25.25■■□□□ 1.63
XRCC1P18887 DUX4L20-201ENST00000619712 1269 ntBASIC25.25■■□□□ 1.63
XRCC1P18887 DUX4L21-201ENST00000622058 1269 ntBASIC25.25■■□□□ 1.63
XRCC1P18887 DUX4L10-201ENST00000622460 1267 ntBASIC25.25■■□□□ 1.63
XRCC1P18887 DUX4L25-201ENST00000624915 1269 ntBASIC25.25■■□□□ 1.63
XRCC1P18887 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
XRCC1P18887 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC25.25■■□□□ 1.63
XRCC1P18887 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
XRCC1P18887 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
XRCC1P18887 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
XRCC1P18887 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC25.24■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms