Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC25.48■■□□□ 1.67
XRCC1P18887 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
XRCC1P18887 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
XRCC1P18887 AC142086.6-201ENST00000621154 1765 ntBASIC25.47■■□□□ 1.67
XRCC1P18887 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC25.47■■□□□ 1.67
XRCC1P18887 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC25.47■■□□□ 1.67
XRCC1P18887 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
XRCC1P18887 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
XRCC1P18887 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
XRCC1P18887 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
XRCC1P18887 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC25.45■■□□□ 1.67
XRCC1P18887 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
XRCC1P18887 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
XRCC1P18887 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC25.44■■□□□ 1.66
XRCC1P18887 LINC01971-201ENST00000617888 1048 ntBASIC25.44■■□□□ 1.66
XRCC1P18887 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC25.44■■□□□ 1.66
XRCC1P18887 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC25.43■■□□□ 1.66
XRCC1P18887 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
XRCC1P18887 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC25.43■■□□□ 1.66
XRCC1P18887 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
XRCC1P18887 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
XRCC1P18887 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC25.42■■□□□ 1.66
XRCC1P18887 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC25.42■■□□□ 1.66
XRCC1P18887 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC25.41■■□□□ 1.66
XRCC1P18887 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC25.41■■□□□ 1.66
XRCC1P18887 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC25.41■■□□□ 1.66
XRCC1P18887 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC25.4■■□□□ 1.66
XRCC1P18887 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
XRCC1P18887 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC25.38■■□□□ 1.65
XRCC1P18887 CALM3-209ENST00000597743 577 ntTSL 4 BASIC25.38■■□□□ 1.65
XRCC1P18887 DUX4L11-201ENST00000611504 1267 ntBASIC25.38■■□□□ 1.65
XRCC1P18887 DUX4L12-201ENST00000614593 1267 ntBASIC25.38■■□□□ 1.65
XRCC1P18887 DUX4L14-201ENST00000621227 1267 ntBASIC25.38■■□□□ 1.65
XRCC1P18887 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
XRCC1P18887 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
XRCC1P18887 MACF1-219ENST00000484793 834 ntTSL 2 BASIC25.37■■□□□ 1.65
XRCC1P18887 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
XRCC1P18887 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC25.36■■□□□ 1.65
XRCC1P18887 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC25.36■■□□□ 1.65
XRCC1P18887 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
XRCC1P18887 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
XRCC1P18887 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
XRCC1P18887 HLA-V-202ENST00000446817 847 ntBASIC25.34■■□□□ 1.65
XRCC1P18887 RNF166-209ENST00000567844 633 ntTSL 5 BASIC25.34■■□□□ 1.65
XRCC1P18887 MBP-237ENST00000579129 1052 ntTSL 5 BASIC25.34■■□□□ 1.65
XRCC1P18887 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.65
XRCC1P18887 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.65
XRCC1P18887 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC25.33■■□□□ 1.65
XRCC1P18887 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC25.33■■□□□ 1.65
XRCC1P18887 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC25.33■■□□□ 1.65
XRCC1P18887 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
XRCC1P18887 LINC00273-201ENST00000539813 1452 ntBASIC25.33■■□□□ 1.65
XRCC1P18887 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.64
XRCC1P18887 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC25.32■■□□□ 1.64
XRCC1P18887 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
XRCC1P18887 AGPS-202ENST00000409888 815 ntTSL 4 BASIC25.32■■□□□ 1.64
XRCC1P18887 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC25.32■■□□□ 1.64
XRCC1P18887 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
XRCC1P18887 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.32■■□□□ 1.64
XRCC1P18887 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
XRCC1P18887 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
XRCC1P18887 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
XRCC1P18887 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC25.31■■□□□ 1.64
XRCC1P18887 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC25.31■■□□□ 1.64
XRCC1P18887 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC25.3■■□□□ 1.64
XRCC1P18887 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
XRCC1P18887 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC25.3■■□□□ 1.64
XRCC1P18887 MIR3648-2-201ENST00000581792 180 ntBASIC25.3■■□□□ 1.64
XRCC1P18887 MIR3648-1-201ENST00000615959 180 ntBASIC25.3■■□□□ 1.64
XRCC1P18887 AC127502.1-201ENST00000399971 1502 ntBASIC25.3■■□□□ 1.64
XRCC1P18887 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC25.29■■□□□ 1.64
XRCC1P18887 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
XRCC1P18887 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC25.28■■□□□ 1.64
XRCC1P18887 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC25.28■■□□□ 1.64
XRCC1P18887 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
XRCC1P18887 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
XRCC1P18887 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC25.28■■□□□ 1.64
XRCC1P18887 GDI1-215ENST00000630693 786 ntTSL 4 BASIC25.28■■□□□ 1.64
XRCC1P18887 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
XRCC1P18887 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC25.27■■□□□ 1.64
XRCC1P18887 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
XRCC1P18887 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
XRCC1P18887 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
XRCC1P18887 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
XRCC1P18887 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
XRCC1P18887 DUX4L13-201ENST00000554103 1267 ntBASIC25.25■■□□□ 1.63
XRCC1P18887 DUX4L15-201ENST00000611059 1267 ntBASIC25.25■■□□□ 1.63
XRCC1P18887 DUX4L23-201ENST00000615195 1269 ntBASIC25.25■■□□□ 1.63
XRCC1P18887 DUX4L24-201ENST00000617576 1269 ntBASIC25.25■■□□□ 1.63
XRCC1P18887 DUX4L22-201ENST00000618238 1269 ntBASIC25.25■■□□□ 1.63
XRCC1P18887 DUX4L20-201ENST00000619712 1269 ntBASIC25.25■■□□□ 1.63
XRCC1P18887 DUX4L21-201ENST00000622058 1269 ntBASIC25.25■■□□□ 1.63
XRCC1P18887 DUX4L10-201ENST00000622460 1267 ntBASIC25.25■■□□□ 1.63
XRCC1P18887 DUX4L25-201ENST00000624915 1269 ntBASIC25.25■■□□□ 1.63
XRCC1P18887 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
XRCC1P18887 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC25.25■■□□□ 1.63
XRCC1P18887 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
XRCC1P18887 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
XRCC1P18887 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
XRCC1P18887 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC25.24■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms