Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 WHAMMP2-203ENST00000563942 1603 ntBASIC20.2■□□□□ 0.82
TRAV41A0A0B4J266 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRAV41A0A0B4J266 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC20.2■□□□□ 0.82
TRAV41A0A0B4J266 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC20.2■□□□□ 0.82
TRAV41A0A0B4J266 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
TRAV41A0A0B4J266 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC20.2■□□□□ 0.82
TRAV41A0A0B4J266 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRAV41A0A0B4J266 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRAV41A0A0B4J266 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRAV41A0A0B4J266 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRAV41A0A0B4J266 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRAV41A0A0B4J266 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC20.19■□□□□ 0.82
TRAV41A0A0B4J266 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
TRAV41A0A0B4J266 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRAV41A0A0B4J266 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
TRAV41A0A0B4J266 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV41A0A0B4J266 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV41A0A0B4J266 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV41A0A0B4J266 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV41A0A0B4J266 AC139426.1-201ENST00000568218 2529 ntBASIC20.18■□□□□ 0.82
TRAV41A0A0B4J266 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC20.17■□□□□ 0.82
TRAV41A0A0B4J266 MIR7108-201ENST00000614319 87 ntBASIC20.17■□□□□ 0.82
TRAV41A0A0B4J266 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC20.17■□□□□ 0.82
TRAV41A0A0B4J266 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC20.17■□□□□ 0.82
TRAV41A0A0B4J266 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAV41A0A0B4J266 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC20.17■□□□□ 0.82
TRAV41A0A0B4J266 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
TRAV41A0A0B4J266 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV41A0A0B4J266 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC20.16■□□□□ 0.82
TRAV41A0A0B4J266 MEST-211ENST00000437945 1455 ntTSL 5 BASIC20.16■□□□□ 0.82
TRAV41A0A0B4J266 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV41A0A0B4J266 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAV41A0A0B4J266 DUX4L11-201ENST00000611504 1267 ntBASIC20.15■□□□□ 0.82
TRAV41A0A0B4J266 DUX4L12-201ENST00000614593 1267 ntBASIC20.15■□□□□ 0.82
TRAV41A0A0B4J266 DUX4L14-201ENST00000621227 1267 ntBASIC20.15■□□□□ 0.82
TRAV41A0A0B4J266 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC20.15■□□□□ 0.82
TRAV41A0A0B4J266 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC20.15■□□□□ 0.82
TRAV41A0A0B4J266 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
TRAV41A0A0B4J266 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC20.14■□□□□ 0.81
TRAV41A0A0B4J266 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC20.14■□□□□ 0.81
TRAV41A0A0B4J266 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV41A0A0B4J266 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC20.14■□□□□ 0.81
TRAV41A0A0B4J266 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
TRAV41A0A0B4J266 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRAV41A0A0B4J266 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRAV41A0A0B4J266 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC20.13■□□□□ 0.81
TRAV41A0A0B4J266 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC20.13■□□□□ 0.81
TRAV41A0A0B4J266 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV41A0A0B4J266 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV41A0A0B4J266 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TRAV41A0A0B4J266 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
TRAV41A0A0B4J266 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TRAV41A0A0B4J266 RNF166-209ENST00000567844 633 ntTSL 5 BASIC20.11■□□□□ 0.81
TRAV41A0A0B4J266 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC20.11■□□□□ 0.81
TRAV41A0A0B4J266 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC20.1■□□□□ 0.81
TRAV41A0A0B4J266 CHML-204ENST00000638121 920 ntTSL 2 BASIC20.1■□□□□ 0.81
TRAV41A0A0B4J266 AC100797.4-201ENST00000631653 1827 ntBASIC20.1■□□□□ 0.81
TRAV41A0A0B4J266 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TRAV41A0A0B4J266 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC20.1■□□□□ 0.81
TRAV41A0A0B4J266 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TRAV41A0A0B4J266 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAV41A0A0B4J266 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
TRAV41A0A0B4J266 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAV41A0A0B4J266 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC20.09■□□□□ 0.81
TRAV41A0A0B4J266 DUX4L13-201ENST00000554103 1267 ntBASIC20.09■□□□□ 0.81
TRAV41A0A0B4J266 DUX4L15-201ENST00000611059 1267 ntBASIC20.09■□□□□ 0.81
TRAV41A0A0B4J266 DUX4L23-201ENST00000615195 1269 ntBASIC20.09■□□□□ 0.81
TRAV41A0A0B4J266 DUX4L24-201ENST00000617576 1269 ntBASIC20.09■□□□□ 0.81
TRAV41A0A0B4J266 DUX4L22-201ENST00000618238 1269 ntBASIC20.09■□□□□ 0.81
TRAV41A0A0B4J266 DUX4L20-201ENST00000619712 1269 ntBASIC20.09■□□□□ 0.81
TRAV41A0A0B4J266 DUX4L21-201ENST00000622058 1269 ntBASIC20.09■□□□□ 0.81
TRAV41A0A0B4J266 DUX4L10-201ENST00000622460 1267 ntBASIC20.09■□□□□ 0.81
TRAV41A0A0B4J266 DUX4L25-201ENST00000624915 1269 ntBASIC20.09■□□□□ 0.81
TRAV41A0A0B4J266 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
TRAV41A0A0B4J266 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC20.09■□□□□ 0.81
TRAV41A0A0B4J266 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC20.09■□□□□ 0.81
TRAV41A0A0B4J266 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
TRAV41A0A0B4J266 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRAV41A0A0B4J266 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TRAV41A0A0B4J266 AGPS-202ENST00000409888 815 ntTSL 4 BASIC20.08■□□□□ 0.81
TRAV41A0A0B4J266 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
TRAV41A0A0B4J266 PVT1-219ENST00000523427 938 ntTSL 3 BASIC20.08■□□□□ 0.81
TRAV41A0A0B4J266 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
TRAV41A0A0B4J266 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
TRAV41A0A0B4J266 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC20.08■□□□□ 0.8
TRAV41A0A0B4J266 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TRAV41A0A0B4J266 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TRAV41A0A0B4J266 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TRAV41A0A0B4J266 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC20.07■□□□□ 0.8
TRAV41A0A0B4J266 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRAV41A0A0B4J266 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC20.07■□□□□ 0.8
TRAV41A0A0B4J266 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC20.06■□□□□ 0.8
TRAV41A0A0B4J266 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRAV41A0A0B4J266 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC20.06■□□□□ 0.8
TRAV41A0A0B4J266 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC20.06■□□□□ 0.8
TRAV41A0A0B4J266 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC20.06■□□□□ 0.8
TRAV41A0A0B4J266 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
TRAV41A0A0B4J266 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC20.06■□□□□ 0.8
TRAV41A0A0B4J266 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRAV41A0A0B4J266 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms