Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 HMGB1P7-201ENST00000450921 612 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC5.23□□□□□ -1.57
HOXA3O43365 SSXP1-201ENST00000453640 473 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 BZW1P1-201ENST00000454901 1240 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 RNU7-27P-201ENST00000459281 62 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 AC128689.1-201ENST00000466206 562 ntTSL 4 BASIC5.23□□□□□ -1.57
HOXA3O43365 AC079841.1-201ENST00000481228 950 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 AC098799.3-201ENST00000506095 438 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 SCARNA5-201ENST00000516201 276 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC5.23□□□□□ -1.57
HOXA3O43365 OR8A2P-201ENST00000528631 952 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 AC022075.2-201ENST00000535911 562 ntTSL 4 BASIC5.23□□□□□ -1.57
HOXA3O43365 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC5.23□□□□□ -1.57
HOXA3O43365 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXA3O43365 AL683813.2-201ENST00000605245 502 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 AC126118.1-201ENST00000607744 628 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 AC024941.1-201ENST00000612250 334 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA3O43365 AC018692.2-201ENST00000624130 348 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXA3O43365 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXA3O43365 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXA3O43365 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXA3O43365 LINC02495-203ENST00000636704 242 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 GCNT2-203ENST00000379597 4525 ntAPPRIS ALT1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA3O43365 ADAL-201ENST00000389651 1559 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA3O43365 AL596244.1-201ENST00000567068 3779 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXA3O43365 ZNF438-201ENST00000331737 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA3O43365 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC5.23□□□□□ -1.57
HOXA3O43365 AC116158.1-201ENST00000560231 2129 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA3O43365 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA3O43365 SCRN1-202ENST00000409497 1732 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
HOXA3O43365 AC012078.1-201ENST00000405035 1646 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 CASC19-246ENST00000641625 1606 ntBASIC5.23□□□□□ -1.57
HOXA3O43365 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA3O43365 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXA3O43365 LINC00624-201ENST00000619867 3088 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA3O43365 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA3O43365 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXA3O43365 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA3O43365 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC5.22□□□□□ -1.57
HOXA3O43365 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA3O43365 SNX25-202ENST00000504273 3323 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA3O43365 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA3O43365 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXA3O43365 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA3O43365 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA3O43365 CSDE1-204ENST00000369530 3774 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA3O43365 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA3O43365 FKBP5-202ENST00000536438 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA3O43365 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA3O43365 RPL12P13-201ENST00000310055 497 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA3O43365 RNU6-660P-201ENST00000364566 109 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 RNU6-867P-201ENST00000364956 107 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
HOXA3O43365 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC5.22□□□□□ -1.57
HOXA3O43365 RNU6-1042P-201ENST00000384204 107 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
HOXA3O43365 NCSTNP1-201ENST00000406229 144 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 LSM5-205ENST00000409952 687 ntTSL 4 BASIC5.22□□□□□ -1.57
HOXA3O43365 RNA5SP198-201ENST00000410376 127 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 RN7SKP108-201ENST00000411367 328 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXA3O43365 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC5.22□□□□□ -1.57
HOXA3O43365 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
HOXA3O43365 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXA3O43365 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC5.22□□□□□ -1.57
HOXA3O43365 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC5.22□□□□□ -1.57
HOXA3O43365 ATP5A1P8-201ENST00000423669 1291 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.22□□□□□ -1.57
HOXA3O43365 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA3O43365 CCNB1IP1P1-201ENST00000428976 839 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 SKP1P3-201ENST00000429280 487 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXA3O43365 AL512286.1-201ENST00000439244 400 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 AC092809.1-201ENST00000441469 474 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC5.22□□□□□ -1.57
HOXA3O43365 HMGN1P2-201ENST00000445197 310 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC5.22□□□□□ -1.57
HOXA3O43365 AL592447.1-201ENST00000447592 540 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 EPS15P1-201ENST00000448836 336 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 RBMY2TP-201ENST00000451162 947 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC5.22□□□□□ -1.57
HOXA3O43365 AC144530.1-201ENST00000452862 555 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 AC016724.1-201ENST00000453215 421 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 DNAJB5P1-201ENST00000454004 806 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC5.22□□□□□ -1.57
HOXA3O43365 RPS4XP15-201ENST00000489210 795 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 PDCL3P4-201ENST00000489621 720 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 CBX1-205ENST00000495350 550 ntTSL 2 BASIC5.22□□□□□ -1.57
HOXA3O43365 MTND2P33-201ENST00000506452 1031 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 AC109471.1-201ENST00000511631 612 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC5.22□□□□□ -1.57
HOXA3O43365 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC5.22□□□□□ -1.57
HOXA3O43365 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC5.22□□□□□ -1.57
HOXA3O43365 AL133399.1-201ENST00000527476 298 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms