Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 TRIM51DP-201ENST00000529746 596 ntBASIC4.79□□□□□ -1.64
SCN1BQ07699 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC4.79□□□□□ -1.64
SCN1BQ07699 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC4.79□□□□□ -1.64
SCN1BQ07699 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC4.79□□□□□ -1.64
SCN1BQ07699 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC4.79□□□□□ -1.64
SCN1BQ07699 AC026826.3-201ENST00000561747 158 ntBASIC4.79□□□□□ -1.64
SCN1BQ07699 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC4.79□□□□□ -1.64
SCN1BQ07699 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC4.79□□□□□ -1.64
SCN1BQ07699 H3F3BP2-201ENST00000583907 357 ntBASIC4.79□□□□□ -1.64
SCN1BQ07699 AC115085.1-201ENST00000588924 229 ntBASIC4.79□□□□□ -1.64
SCN1BQ07699 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC4.79□□□□□ -1.64
SCN1BQ07699 GMFG-202ENST00000594700 397 ntTSL 2 BASIC4.79□□□□□ -1.64
SCN1BQ07699 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC4.79□□□□□ -1.64
SCN1BQ07699 AC005034.4-201ENST00000603612 899 ntBASIC4.79□□□□□ -1.64
SCN1BQ07699 AC079610.2-201ENST00000604818 690 ntBASIC4.79□□□□□ -1.64
SCN1BQ07699 AP001033.2-201ENST00000609701 1003 ntBASIC4.79□□□□□ -1.64
SCN1BQ07699 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SCN1BQ07699 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC4.79□□□□□ -1.64
SCN1BQ07699 AC245389.2-201ENST00000616023 576 ntBASIC4.79□□□□□ -1.64
SCN1BQ07699 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SCN1BQ07699 AC242843.1-201ENST00000618702 573 ntBASIC4.79□□□□□ -1.64
SCN1BQ07699 AL591926.1-201ENST00000620542 217 ntBASIC4.79□□□□□ -1.64
SCN1BQ07699 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
SCN1BQ07699 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC4.79□□□□□ -1.64
SCN1BQ07699 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.79□□□□□ -1.64
SCN1BQ07699 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SCN1BQ07699 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SCN1BQ07699 ASNSP1-201ENST00000518311 1939 ntBASIC4.79□□□□□ -1.64
SCN1BQ07699 AC093535.2-201ENST00000624769 2326 ntBASIC4.79□□□□□ -1.64
SCN1BQ07699 CYP1D1P-201ENST00000416662 1433 ntBASIC4.79□□□□□ -1.64
SCN1BQ07699 AC126323.6-202ENST00000568092 3511 ntBASIC4.79□□□□□ -1.64
SCN1BQ07699 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.79□□□□□ -1.64
SCN1BQ07699 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
SCN1BQ07699 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SCN1BQ07699 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.78□□□□□ -1.64
SCN1BQ07699 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SCN1BQ07699 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SCN1BQ07699 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.78□□□□□ -1.64
SCN1BQ07699 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SCN1BQ07699 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SCN1BQ07699 RNA5SP477-201ENST00000362639 119 ntBASIC4.78□□□□□ -1.64
SCN1BQ07699 RNU6-650P-201ENST00000365658 111 ntBASIC4.78□□□□□ -1.64
SCN1BQ07699 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SCN1BQ07699 AC005522.1-201ENST00000395416 346 ntBASIC4.78□□□□□ -1.64
SCN1BQ07699 RPL31P52-201ENST00000407532 367 ntBASIC4.78□□□□□ -1.64
SCN1BQ07699 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC4.78□□□□□ -1.64
SCN1BQ07699 VTA1P1-201ENST00000414044 866 ntBASIC4.78□□□□□ -1.64
SCN1BQ07699 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC4.78□□□□□ -1.64
SCN1BQ07699 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC4.78□□□□□ -1.64
SCN1BQ07699 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC4.78□□□□□ -1.64
SCN1BQ07699 HMGB3P24-201ENST00000433260 622 ntBASIC4.78□□□□□ -1.64
SCN1BQ07699 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC4.78□□□□□ -1.64
SCN1BQ07699 FTH1P16-201ENST00000435241 552 ntBASIC4.78□□□□□ -1.64
SCN1BQ07699 RNFT1P2-201ENST00000443064 757 ntBASIC4.78□□□□□ -1.64
SCN1BQ07699 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC4.78□□□□□ -1.64
SCN1BQ07699 TPTE2P6-202ENST00000445572 1007 ntBASIC4.78□□□□□ -1.64
SCN1BQ07699 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC4.78□□□□□ -1.64
SCN1BQ07699 RN7SL570P-201ENST00000484405 292 ntBASIC4.78□□□□□ -1.64
SCN1BQ07699 RPS24P16-201ENST00000497294 392 ntBASIC4.78□□□□□ -1.64
SCN1BQ07699 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC4.78□□□□□ -1.64
SCN1BQ07699 NIFKP7-201ENST00000503365 834 ntBASIC4.78□□□□□ -1.64
SCN1BQ07699 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
SCN1BQ07699 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC4.78□□□□□ -1.64
SCN1BQ07699 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC4.78□□□□□ -1.64
SCN1BQ07699 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC4.78□□□□□ -1.64
SCN1BQ07699 HMGN2P36-201ENST00000529541 409 ntBASIC4.78□□□□□ -1.64
SCN1BQ07699 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC4.78□□□□□ -1.64
SCN1BQ07699 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC4.78□□□□□ -1.64
SCN1BQ07699 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC4.78□□□□□ -1.64
SCN1BQ07699 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC4.78□□□□□ -1.64
SCN1BQ07699 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC4.78□□□□□ -1.64
SCN1BQ07699 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SCN1BQ07699 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.78□□□□□ -1.64
SCN1BQ07699 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC4.78□□□□□ -1.64
SCN1BQ07699 MIR7109-201ENST00000613748 65 ntBASIC4.78□□□□□ -1.64
SCN1BQ07699 AL359513.1-201ENST00000614364 557 ntBASIC4.78□□□□□ -1.64
SCN1BQ07699 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SCN1BQ07699 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC4.78□□□□□ -1.64
SCN1BQ07699 AL445493.3-201ENST00000619568 477 ntBASIC4.78□□□□□ -1.64
SCN1BQ07699 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC4.78□□□□□ -1.64
SCN1BQ07699 AC129778.1-202ENST00000623812 261 ntBASIC4.78□□□□□ -1.64
SCN1BQ07699 AL390318.1-201ENST00000624564 687 ntBASIC4.78□□□□□ -1.64
SCN1BQ07699 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC4.78□□□□□ -1.64
SCN1BQ07699 AL591379.1-207ENST00000635982 261 ntBASIC4.78□□□□□ -1.64
SCN1BQ07699 AMYH02020865.1-205ENST00000636189 261 ntBASIC4.78□□□□□ -1.64
SCN1BQ07699 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SCN1BQ07699 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
SCN1BQ07699 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
SCN1BQ07699 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.78□□□□□ -1.64
SCN1BQ07699 AC021242.1-201ENST00000507315 2035 ntBASIC4.78□□□□□ -1.64
SCN1BQ07699 ERVFRD-3-201ENST00000578561 1617 ntBASIC4.78□□□□□ -1.64
SCN1BQ07699 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SCN1BQ07699 IFIT1P1-201ENST00000400497 1449 ntBASIC4.78□□□□□ -1.64
SCN1BQ07699 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
SCN1BQ07699 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC4.78□□□□□ -1.64
SCN1BQ07699 AP000542.2-201ENST00000623199 6179 ntBASIC4.78□□□□□ -1.64
SCN1BQ07699 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
SCN1BQ07699 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.78□□□□□ -1.64
SCN1BQ07699 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SCN1BQ07699 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms