Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC011998.1-201ENST00000433403 117 ntBASIC3.32□□□□□ -1.88
PRKDCP78527 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC3.32□□□□□ -1.88
PRKDCP78527 AC090515.3-201ENST00000560431 315 ntBASIC3.32□□□□□ -1.88
PRKDCP78527 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC3.32□□□□□ -1.88
PRKDCP78527 AC019176.2-201ENST00000611579 315 ntBASIC3.32□□□□□ -1.88
PRKDCP78527 MIR3651-201ENST00000630427 90 ntBASIC3.32□□□□□ -1.88
PRKDCP78527 PTK2-207ENST00000517887 4661 ntTSL 5 BASIC3.32□□□□□ -1.88
PRKDCP78527 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
PRKDCP78527 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
PRKDCP78527 PUM1-204ENST00000373747 5375 ntAPPRIS ALT1 TSL 5 BASIC3.32□□□□□ -1.88
PRKDCP78527 AP2B1-221ENST00000621914 5702 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
PRKDCP78527 ABCA4-201ENST00000370225 7309 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
PRKDCP78527 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
PRKDCP78527 UTY-215ENST00000618474 6277 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
PRKDCP78527 SNORA70.9-201ENST00000384370 135 ntBASIC3.32□□□□□ -1.88
PRKDCP78527 SDHCP2-201ENST00000398565 501 ntBASIC3.32□□□□□ -1.88
PRKDCP78527 VN1R51P-201ENST00000411675 945 ntBASIC3.32□□□□□ -1.88
PRKDCP78527 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC3.32□□□□□ -1.88
PRKDCP78527 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC3.32□□□□□ -1.88
PRKDCP78527 RNU1-6P-201ENST00000516290 144 ntBASIC3.32□□□□□ -1.88
PRKDCP78527 MIR7151-201ENST00000617477 60 ntBASIC3.32□□□□□ -1.88
PRKDCP78527 KCNN3-201ENST00000271915 13033 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
PRKDCP78527 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
PRKDCP78527 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
PRKDCP78527 PAN2-202ENST00000425394 5372 ntAPPRIS ALT1 TSL 1 (best) BASIC3.31□□□□□ -1.88
PRKDCP78527 ZBTB40-201ENST00000374651 8368 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
PRKDCP78527 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
PRKDCP78527 AC011933.1-201ENST00000413334 321 ntBASIC3.31□□□□□ -1.88
PRKDCP78527 AC116533.1-201ENST00000459748 321 ntBASIC3.31□□□□□ -1.88
PRKDCP78527 AC005412.2-201ENST00000492004 341 ntBASIC3.31□□□□□ -1.88
PRKDCP78527 ENPP7P11-201ENST00000505915 627 ntBASIC3.31□□□□□ -1.88
PRKDCP78527 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
PRKDCP78527 FCF1-203ENST00000553615 954 ntTSL 3 BASIC3.31□□□□□ -1.88
PRKDCP78527 AL451086.1-201ENST00000605596 223 ntBASIC3.31□□□□□ -1.88
PRKDCP78527 AC091979.2-201ENST00000607514 214 ntBASIC3.31□□□□□ -1.88
PRKDCP78527 AC020634.1-201ENST00000608701 549 ntBASIC3.31□□□□□ -1.88
PRKDCP78527 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
PRKDCP78527 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
PRKDCP78527 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC3.31□□□□□ -1.88
PRKDCP78527 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
PRKDCP78527 AC138907.8-201ENST00000623981 2256 ntBASIC3.31□□□□□ -1.88
PRKDCP78527 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
PRKDCP78527 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
PRKDCP78527 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC3.31□□□□□ -1.88
PRKDCP78527 LTBP1-204ENST00000407925 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
PRKDCP78527 ZNF518A-201ENST00000316045 7277 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
PRKDCP78527 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC3.31□□□□□ -1.88
PRKDCP78527 AC092651.1-201ENST00000426110 312 ntBASIC3.31□□□□□ -1.88
PRKDCP78527 AC093249.4-201ENST00000564755 259 ntBASIC3.31□□□□□ -1.88
PRKDCP78527 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
PRKDCP78527 LSAMP-205ENST00000490035 9446 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
PRKDCP78527 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
PRKDCP78527 TOGARAM2-201ENST00000379558 12691 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
PRKDCP78527 WDFY2-201ENST00000298125 9321 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
PRKDCP78527 AL592182.3-201ENST00000642132 3304 ntBASIC3.31□□□□□ -1.88
PRKDCP78527 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC3.31□□□□□ -1.88
PRKDCP78527 AL590004.4-201ENST00000566733 7060 ntBASIC3.31□□□□□ -1.88
PRKDCP78527 U8.11-201ENST00000384699 133 ntBASIC3.31□□□□□ -1.88
PRKDCP78527 U8.12-201ENST00000384701 133 ntBASIC3.31□□□□□ -1.88
PRKDCP78527 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
PRKDCP78527 AL590704.1-201ENST00000402856 794 ntBASIC3.31□□□□□ -1.88
PRKDCP78527 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC3.31□□□□□ -1.88
PRKDCP78527 PPIAP3-201ENST00000450588 505 ntBASIC3.31□□□□□ -1.88
PRKDCP78527 U8.18-201ENST00000459285 133 ntBASIC3.31□□□□□ -1.88
PRKDCP78527 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC3.31□□□□□ -1.88
PRKDCP78527 AL596275.2-208ENST00000641192 594 ntBASIC3.31□□□□□ -1.88
PRKDCP78527 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
PRKDCP78527 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC3.31□□□□□ -1.88
PRKDCP78527 CTNND1-213ENST00000526357 5994 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
PRKDCP78527 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
PRKDCP78527 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC3.31□□□□□ -1.88
PRKDCP78527 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC3.31□□□□□ -1.88
PRKDCP78527 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
PRKDCP78527 A2ML1-201ENST00000299698 5274 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
PRKDCP78527 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
PRKDCP78527 AC004076.2-201ENST00000620532 3323 ntBASIC3.3□□□□□ -1.88
PRKDCP78527 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC3.3□□□□□ -1.88
PRKDCP78527 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC3.3□□□□□ -1.88
PRKDCP78527 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
PRKDCP78527 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
PRKDCP78527 MRPL48P1-201ENST00000445390 636 ntBASIC3.3□□□□□ -1.88
PRKDCP78527 PPIAP15-201ENST00000479662 484 ntBASIC3.3□□□□□ -1.88
PRKDCP78527 HSPD1P15-201ENST00000505573 1122 ntBASIC3.3□□□□□ -1.88
PRKDCP78527 RNA5SP360-201ENST00000516555 118 ntBASIC3.3□□□□□ -1.88
PRKDCP78527 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
PRKDCP78527 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC3.3□□□□□ -1.88
PRKDCP78527 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC3.3□□□□□ -1.88
PRKDCP78527 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC3.3□□□□□ -1.88
PRKDCP78527 OR2L1P-202ENST00000641567 1023 ntBASIC3.3□□□□□ -1.88
PRKDCP78527 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC3.3□□□□□ -1.88
PRKDCP78527 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
PRKDCP78527 ZNF397-202ENST00000330501 5251 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
PRKDCP78527 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
PRKDCP78527 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC3.3□□□□□ -1.88
PRKDCP78527 TTC28-208ENST00000612946 11274 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
PRKDCP78527 LPP-208ENST00000448637 5835 ntTSL 5 BASIC3.3□□□□□ -1.88
PRKDCP78527 CSNK1G1-201ENST00000303052 8179 ntAPPRIS P2 TSL 1 (best) BASIC3.3□□□□□ -1.88
PRKDCP78527 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
PRKDCP78527 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC3.3□□□□□ -1.88
PRKDCP78527 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms