RNA–Protein interactions for RNA: ENST00000370225.3

ABCA4-201, Transcript of ATP binding cassette subfamily A member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ABCA4, Length 7,309 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4-201ENST00000370225 DCAF8L2P0C7V8 631 aa15.26■□□□□ 0.03
ABCA4-201ENST00000370225 SUPT5HO00267 1087 aaKnown RBP14.21□□□□□ -0.14
ABCA4-201ENST00000370225 EHMT2Q96KQ7 1210 aa14.14□□□□□ -0.15
ABCA4-201ENST00000370225 SHROOM4Q9ULL8 1493 aa14.02□□□□□ -0.17
ABCA4-201ENST00000370225 NISCHQ9Y2I1 1504 aa13.7□□□□□ -0.22
ABCA4-201ENST00000370225 TTBK1Q5TCY1 1321 aaPredicted RBP13.6□□□□□ -0.23
ABCA4-201ENST00000370225 APLP2Q06481 763 aa13.55□□□□□ -0.24
ABCA4-201ENST00000370225 FAM9AQ8IZU1 332 aaPredicted RBP13.52□□□□□ -0.25
ABCA4-201ENST00000370225 RANGAP1P46060 587 aaPredicted RBP13.5□□□□□ -0.25
ABCA4-201ENST00000370225 ATP1B4Q9UN42 357 aaPredicted RBP13.35□□□□□ -0.27
ABCA4-201ENST00000370225 PELP1Q8IZL8 1130 aaKnown RBP13.31□□□□□ -0.28
ABCA4-201ENST00000370225 PCGF6Q9BYE7 350 aa13.2□□□□□ -0.3
ABCA4-201ENST00000370225 TRIM41Q8WV44 630 aa13.04□□□□□ -0.32
ABCA4-201ENST00000370225 UBTFP17480 764 aaKnown RBP13.03□□□□□ -0.32
ABCA4-201ENST00000370225 CCER1Q8TC90 406 aaPredicted RBP12.99□□□□□ -0.33
ABCA4-201ENST00000370225 ERICH6Q7L0X2 663 aa12.95□□□□□ -0.34
ABCA4-201ENST00000370225 MYT1LQ9UL68 1186 aa12.94□□□□□ -0.34
ABCA4-201ENST00000370225 PPARGC1BQ86YN6 1023 aaKnown RBP12.94□□□□□ -0.34
ABCA4-201ENST00000370225 CHIC1Q5VXU3 224 aa12.86□□□□□ -0.35
ABCA4-201ENST00000370225 YTHDC1Q96MU7 727 aaKnown RBP12.85□□□□□ -0.35
ABCA4-201ENST00000370225 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.84□□□□□ -0.35
ABCA4-201ENST00000370225 HNRNPUL2Q1KMD3 747 aaKnown RBP12.84□□□□□ -0.35
ABCA4-201ENST00000370225 CENPBP07199 599 aaPredicted RBP12.78□□□□□ -0.36
ABCA4-201ENST00000370225 POLR3GLQ9BT43 218 aa12.78□□□□□ -0.36
ABCA4-201ENST00000370225 ITGAEP38570 1179 aa12.77□□□□□ -0.36
ABCA4-201ENST00000370225 CNGB1Q14028 1251 aaPredicted RBP12.73□□□□□ -0.37
ABCA4-201ENST00000370225 NEFLP07196 543 aa12.69□□□□□ -0.38
ABCA4-201ENST00000370225 ZEB1P37275 1124 aaPredicted RBP12.67□□□□□ -0.38
ABCA4-201ENST00000370225 MYT1Q01538 1121 aa12.67□□□□□ -0.38
ABCA4-201ENST00000370225 SLC4A1APQ9BWU0 796 aaKnown RBP12.63□□□□□ -0.39
ABCA4-201ENST00000370225 LOC105371045A0A1W2PR82 267 aa12.45□□□□□ -0.42
ABCA4-201ENST00000370225 DAXXQ9UER7 740 aaPredicted RBP12.44□□□□□ -0.42
ABCA4-201ENST00000370225 PABPN1Q86U42 306 aaKnown RBP eCLIP12.42□□□□□ -0.42
ABCA4-201ENST00000370225 TRIM26Q12899 539 aaPredicted RBP12.38□□□□□ -0.43
ABCA4-201ENST00000370225 FAM50AQ14320 339 aaKnown RBP12.35□□□□□ -0.43
ABCA4-201ENST00000370225 FBLN2P98095 1184 aa12.35□□□□□ -0.43
ABCA4-201ENST00000370225 ABCC9O60706 1549 aa12.31□□□□□ -0.44
ABCA4-201ENST00000370225 TRIM52Q96A61 297 aa12.31□□□□□ -0.44
ABCA4-201ENST00000370225 SLC24A1O60721 1099 aa12.26□□□□□ -0.45
ABCA4-201ENST00000370225 CLSPNQ9HAW4 1339 aa12.26□□□□□ -0.45
ABCA4-201ENST00000370225 ZNF326Q5BKZ1 582 aaKnown RBP12.25□□□□□ -0.45
ABCA4-201ENST00000370225 NEUROD1Q13562 356 aa12.25□□□□□ -0.45
ABCA4-201ENST00000370225 ARID3CA6NKF2 412 aa12.23□□□□□ -0.45
ABCA4-201ENST00000370225 HRCP23327 699 aa12.23□□□□□ -0.45
ABCA4-201ENST00000370225 BCANQ96GW7 911 aa12.23□□□□□ -0.45
ABCA4-201ENST00000370225 BCL11AQ9H165 835 aa12.23□□□□□ -0.45
ABCA4-201ENST00000370225 PLPPR3Q6T4P5 718 aa12.19□□□□□ -0.46
ABCA4-201ENST00000370225 ZNF316A6NFI3 1004 aaPredicted RBP12.16□□□□□ -0.46
ABCA4-201ENST00000370225 P3H3Q8IVL6 736 aa12.12□□□□□ -0.47
ABCA4-201ENST00000370225 ZNF777Q9ULD5 760 aaPredicted RBP12.05□□□□□ -0.48
ABCA4-201ENST00000370225 DIEXFQ68CQ4 756 aaKnown RBP12.04□□□□□ -0.48
ABCA4-201ENST00000370225 ZBTB47Q9UFB7 747 aaPredicted RBP12.02□□□□□ -0.49
ABCA4-201ENST00000370225 CANXP27824 592 aaKnown RBP11.99□□□□□ -0.49
ABCA4-201ENST00000370225 RTL5Q5HYW3 569 aaPredicted RBP11.99□□□□□ -0.49
ABCA4-201ENST00000370225 ESF1Q9H501 851 aaKnown RBP11.96□□□□□ -0.49
ABCA4-201ENST00000370225 CHGAP10645 457 aaKnown RBP11.94□□□□□ -0.5
ABCA4-201ENST00000370225 ANP32CO43423 234 aa11.94□□□□□ -0.5
ABCA4-201ENST00000370225 NEFMP07197 916 aa11.92□□□□□ -0.5
ABCA4-201ENST00000370225 STAG3Q9UJ98 1225 aa11.92□□□□□ -0.5
ABCA4-201ENST00000370225 SENP3Q9H4L4 574 aaPredicted RBP11.87□□□□□ -0.51
ABCA4-201ENST00000370225 SCAF1Q9H7N4 1312 aaKnown RBP11.84□□□□□ -0.51
ABCA4-201ENST00000370225 PLEKHG5O94827 1062 aa11.83□□□□□ -0.51
ABCA4-201ENST00000370225 NPM1P06748 294 aaKnown RBP eCLIP11.8□□□□□ -0.52
ABCA4-201ENST00000370225 A0A0G2JS52 829 aa11.8□□□□□ -0.52
ABCA4-201ENST00000370225 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.8□□□□□ -0.52
ABCA4-201ENST00000370225 CDK11AQ9UQ88 783 aaPredicted RBP11.79□□□□□ -0.52
ABCA4-201ENST00000370225 NPM2Q86SE8 214 aaKnown RBP11.76□□□□□ -0.53
ABCA4-201ENST00000370225 SCRIBQ14160 1630 aa11.75□□□□□ -0.53
ABCA4-201ENST00000370225 SALL2Q9Y467 1007 aaPredicted RBP11.75□□□□□ -0.53
ABCA4-201ENST00000370225 GTF3C3Q9Y5Q9 886 aa11.75□□□□□ -0.53
ABCA4-201ENST00000370225 ZBTB7CA1YPR0 619 aa11.74□□□□□ -0.53
ABCA4-201ENST00000370225 CHIC2Q9UKJ5 165 aa11.73□□□□□ -0.53
ABCA4-201ENST00000370225 CSRNP3Q8WYN3 585 aa11.71□□□□□ -0.54
ABCA4-201ENST00000370225 KDM2AQ9Y2K7 1162 aa11.67□□□□□ -0.54
ABCA4-201ENST00000370225 C14orf37Q86TY3 774 aa11.65□□□□□ -0.54
ABCA4-201ENST00000370225 FAM9BQ8IZU0 186 aa11.65□□□□□ -0.54
ABCA4-201ENST00000370225 TONSLQ96HA7 1378 aa11.63□□□□□ -0.55
ABCA4-201ENST00000370225 HSP90AA1P07900 732 aaKnown RBP11.63□□□□□ -0.55
ABCA4-201ENST00000370225 CHMP7Q8WUX9 453 aaPredicted RBP11.62□□□□□ -0.55
ABCA4-201ENST00000370225 KCNH8Q96L42 1107 aa11.61□□□□□ -0.55
ABCA4-201ENST00000370225 ANP32AP39687 249 aaKnown RBP11.6□□□□□ -0.55
ABCA4-201ENST00000370225 DDX10Q13206 875 aaKnown RBP11.58□□□□□ -0.56
ABCA4-201ENST00000370225 ARID4BQ4LE39 1312 aaPredicted RBP11.57□□□□□ -0.56
ABCA4-201ENST00000370225 HNRNPUQ00839 825 aaKnown RBP eCLIP11.57□□□□□ -0.56
ABCA4-201ENST00000370225 PPP1R15AO75807 674 aaPredicted RBP11.55□□□□□ -0.56
ABCA4-201ENST00000370225 FKBP8Q14318 412 aa11.55□□□□□ -0.56
ABCA4-201ENST00000370225 HIRIP3Q9BW71 556 aaPredicted RBP11.54□□□□□ -0.56
ABCA4-201ENST00000370225 TSPY4P0CV99 314 aa11.53□□□□□ -0.56
ABCA4-201ENST00000370225 TSPY10P0CW01 314 aa11.53□□□□□ -0.56
ABCA4-201ENST00000370225 HAP1P54257 671 aaPredicted RBP11.53□□□□□ -0.56
ABCA4-201ENST00000370225 WDR43Q15061 677 aaKnown RBP eCLIP11.53□□□□□ -0.56
ABCA4-201ENST00000370225 ARXQ96QS3 562 aa11.52□□□□□ -0.56
ABCA4-201ENST00000370225 TMC1Q8TDI8 760 aa11.52□□□□□ -0.57
ABCA4-201ENST00000370225 SENP3-EIF4A1A0A087X0R7 540 aa11.5□□□□□ -0.57
ABCA4-201ENST00000370225 UPF2Q9HAU5 1272 aaKnown RBP11.49□□□□□ -0.57
ABCA4-201ENST00000370225 RRP7BPQ9NSQ0 103 aa11.49□□□□□ -0.57
ABCA4-201ENST00000370225 MTUS2Q5JR59 1369 aa11.48□□□□□ -0.57
ABCA4-201ENST00000370225 ANP32BQ92688 251 aaKnown RBP11.47□□□□□ -0.57
ABCA4-201ENST00000370225 RGL3Q3MIN7 710 aa11.46□□□□□ -0.57
ABCA4-201ENST00000370225 IRX6P78412 446 aaPredicted RBP11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms