RNA–Protein interactions for RNA: ENST00000490035.6

LSAMP-205, Transcript of limbic system associated membrane protein, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSAMP, Length 9,446 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSAMP-205ENST00000490035 DCAF8L2P0C7V8 631 aa14.65□□□□□ -0.06
LSAMP-205ENST00000490035 NISCHQ9Y2I1 1504 aa14.48□□□□□ -0.09
LSAMP-205ENST00000490035 PELP1Q8IZL8 1130 aaKnown RBP14.27□□□□□ -0.12
LSAMP-205ENST00000490035 SUPT5HO00267 1087 aaKnown RBP13.98□□□□□ -0.17
LSAMP-205ENST00000490035 FAM9AQ8IZU1 332 aaPredicted RBP13.88□□□□□ -0.19
LSAMP-205ENST00000490035 APLP2Q06481 763 aa13.84□□□□□ -0.19
LSAMP-205ENST00000490035 ZEB1P37275 1124 aaPredicted RBP13.63□□□□□ -0.23
LSAMP-205ENST00000490035 SHROOM4Q9ULL8 1493 aa13.61□□□□□ -0.23
LSAMP-205ENST00000490035 CCER1Q8TC90 406 aaPredicted RBP13.61□□□□□ -0.23
LSAMP-205ENST00000490035 CENPBP07199 599 aaPredicted RBP13.5□□□□□ -0.25
LSAMP-205ENST00000490035 MYT1Q01538 1121 aa13.49□□□□□ -0.25
LSAMP-205ENST00000490035 ERICH6Q7L0X2 663 aa13.36□□□□□ -0.27
LSAMP-205ENST00000490035 EHMT2Q96KQ7 1210 aa13.23□□□□□ -0.29
LSAMP-205ENST00000490035 TRIM41Q8WV44 630 aa13.21□□□□□ -0.29
LSAMP-205ENST00000490035 NEFLP07196 543 aa13.2□□□□□ -0.3
LSAMP-205ENST00000490035 PCGF6Q9BYE7 350 aa13.19□□□□□ -0.3
LSAMP-205ENST00000490035 UBTFP17480 764 aaKnown RBP13.05□□□□□ -0.32
LSAMP-205ENST00000490035 YTHDC1Q96MU7 727 aaKnown RBP13□□□□□ -0.33
LSAMP-205ENST00000490035 ATP1B4Q9UN42 357 aaPredicted RBP12.96□□□□□ -0.34
LSAMP-205ENST00000490035 TRIM26Q12899 539 aaPredicted RBP12.94□□□□□ -0.34
LSAMP-205ENST00000490035 DAXXQ9UER7 740 aaPredicted RBP12.88□□□□□ -0.35
LSAMP-205ENST00000490035 TTBK1Q5TCY1 1321 aaPredicted RBP12.88□□□□□ -0.35
LSAMP-205ENST00000490035 RANGAP1P46060 587 aaPredicted RBP12.8□□□□□ -0.36
LSAMP-205ENST00000490035 HRCP23327 699 aa12.65□□□□□ -0.38
LSAMP-205ENST00000490035 MYT1LQ9UL68 1186 aa12.56□□□□□ -0.4
LSAMP-205ENST00000490035 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.55□□□□□ -0.4
LSAMP-205ENST00000490035 HNRNPUL2Q1KMD3 747 aaKnown RBP12.55□□□□□ -0.4
LSAMP-205ENST00000490035 RTL5Q5HYW3 569 aaPredicted RBP12.54□□□□□ -0.4
LSAMP-205ENST00000490035 ZNF316A6NFI3 1004 aaPredicted RBP12.52□□□□□ -0.41
LSAMP-205ENST00000490035 CHIC1Q5VXU3 224 aa12.45□□□□□ -0.42
LSAMP-205ENST00000490035 DIEXFQ68CQ4 756 aaKnown RBP12.43□□□□□ -0.42
LSAMP-205ENST00000490035 ITGAEP38570 1179 aa12.42□□□□□ -0.42
LSAMP-205ENST00000490035 POLR3GLQ9BT43 218 aa12.42□□□□□ -0.42
LSAMP-205ENST00000490035 CLSPNQ9HAW4 1339 aa12.41□□□□□ -0.42
LSAMP-205ENST00000490035 ZBTB47Q9UFB7 747 aaPredicted RBP12.35□□□□□ -0.43
LSAMP-205ENST00000490035 PPARGC1BQ86YN6 1023 aaKnown RBP12.35□□□□□ -0.43
LSAMP-205ENST00000490035 ANP32CO43423 234 aa12.33□□□□□ -0.44
LSAMP-205ENST00000490035 CCDC180Q9P1Z9 1646 aa12.32□□□□□ -0.44
LSAMP-205ENST00000490035 SLC4A1APQ9BWU0 796 aaKnown RBP12.31□□□□□ -0.44
LSAMP-205ENST00000490035 CDK11AQ9UQ88 783 aaPredicted RBP12.3□□□□□ -0.44
LSAMP-205ENST00000490035 FAM50AQ14320 339 aaKnown RBP12.29□□□□□ -0.44
LSAMP-205ENST00000490035 LOC105371045A0A1W2PR82 267 aa12.27□□□□□ -0.44
LSAMP-205ENST00000490035 NEFMP07197 916 aa12.27□□□□□ -0.44
LSAMP-205ENST00000490035 TRIM52Q96A61 297 aa12.25□□□□□ -0.45
LSAMP-205ENST00000490035 ACIN1Q9UKV3 1341 aaKnown RBP12.21□□□□□ -0.46
LSAMP-205ENST00000490035 ANP32AP39687 249 aaKnown RBP12.14□□□□□ -0.47
LSAMP-205ENST00000490035 ABCC9O60706 1549 aa12.13□□□□□ -0.47
LSAMP-205ENST00000490035 CANXP27824 592 aaKnown RBP12.12□□□□□ -0.47
LSAMP-205ENST00000490035 ANP32BQ92688 251 aaKnown RBP12.11□□□□□ -0.47
LSAMP-205ENST00000490035 NEUROD1Q13562 356 aa12.1□□□□□ -0.47
LSAMP-205ENST00000490035 DCAF1Q9Y4B6 1507 aa12.09□□□□□ -0.47
LSAMP-205ENST00000490035 UPF2Q9HAU5 1272 aaKnown RBP12.05□□□□□ -0.48
LSAMP-205ENST00000490035 CNGB1Q14028 1251 aaPredicted RBP12.05□□□□□ -0.48
LSAMP-205ENST00000490035 CSRNP3Q8WYN3 585 aa12.03□□□□□ -0.48
LSAMP-205ENST00000490035 GTF3C3Q9Y5Q9 886 aa12.03□□□□□ -0.48
LSAMP-205ENST00000490035 TONSLQ96HA7 1378 aa11.99□□□□□ -0.49
LSAMP-205ENST00000490035 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.98□□□□□ -0.49
LSAMP-205ENST00000490035 ZCCHC6Q5VYS8 1495 aaKnown RBP11.98□□□□□ -0.49
LSAMP-205ENST00000490035 SCRIBQ14160 1630 aa11.97□□□□□ -0.49
LSAMP-205ENST00000490035 GLIPR1L2Q4G1C9 344 aa11.97□□□□□ -0.49
LSAMP-205ENST00000490035 ZNF326Q5BKZ1 582 aaKnown RBP11.97□□□□□ -0.49
LSAMP-205ENST00000490035 EIF5BO60841 1220 aaKnown RBP11.96□□□□□ -0.49
LSAMP-205ENST00000490035 ESF1Q9H501 851 aaKnown RBP11.93□□□□□ -0.5
LSAMP-205ENST00000490035 EEA1Q15075 1411 aa11.93□□□□□ -0.5
LSAMP-205ENST00000490035 HSP90AA1P07900 732 aaKnown RBP11.92□□□□□ -0.5
LSAMP-205ENST00000490035 PABPN1Q86U42 306 aaKnown RBP eCLIP11.92□□□□□ -0.5
LSAMP-205ENST00000490035 RB1CC1Q8TDY2 1594 aa11.9□□□□□ -0.5
LSAMP-205ENST00000490035 FBLN2P98095 1184 aa11.9□□□□□ -0.51
LSAMP-205ENST00000490035 BCANQ96GW7 911 aa11.9□□□□□ -0.51
LSAMP-205ENST00000490035 ANP32EQ9BTT0 268 aa11.89□□□□□ -0.51
LSAMP-205ENST00000490035 SLC24A1O60721 1099 aa11.88□□□□□ -0.51
LSAMP-205ENST00000490035 NPM1P06748 294 aaKnown RBP eCLIP11.84□□□□□ -0.51
LSAMP-205ENST00000490035 RSF1Q96T23 1441 aaPredicted RBP11.83□□□□□ -0.52
LSAMP-205ENST00000490035 NACADO15069 1562 aa11.81□□□□□ -0.52
LSAMP-205ENST00000490035 TMC1Q8TDI8 760 aa11.81□□□□□ -0.52
LSAMP-205ENST00000490035 STAG3Q9UJ98 1225 aa11.8□□□□□ -0.52
LSAMP-205ENST00000490035 WDR43Q15061 677 aaKnown RBP eCLIP11.79□□□□□ -0.52
LSAMP-205ENST00000490035 DDRGK1Q96HY6 314 aa11.78□□□□□ -0.52
LSAMP-205ENST00000490035 MYH16Q9H6N6 1097 aa11.78□□□□□ -0.52
LSAMP-205ENST00000490035 TSPY4P0CV99 314 aa11.78□□□□□ -0.52
LSAMP-205ENST00000490035 TSPY10P0CW01 314 aa11.78□□□□□ -0.52
LSAMP-205ENST00000490035 ZNF777Q9ULD5 760 aaPredicted RBP11.78□□□□□ -0.52
LSAMP-205ENST00000490035 HNRNPUQ00839 825 aaKnown RBP eCLIP11.77□□□□□ -0.53
LSAMP-205ENST00000490035 MTUS2Q5JR59 1369 aa11.76□□□□□ -0.53
LSAMP-205ENST00000490035 CCDC136Q96JN2 1154 aa11.75□□□□□ -0.53
LSAMP-205ENST00000490035 BECN1Q14457 450 aa11.75□□□□□ -0.53
LSAMP-205ENST00000490035 CDCA8Q53HL2 280 aa11.75□□□□□ -0.53
LSAMP-205ENST00000490035 FKBP8Q14318 412 aa11.74□□□□□ -0.53
LSAMP-205ENST00000490035 GOLGA3Q08378 1498 aa11.74□□□□□ -0.53
LSAMP-205ENST00000490035 P3H3Q8IVL6 736 aa11.72□□□□□ -0.53
LSAMP-205ENST00000490035 NPM2Q86SE8 214 aaKnown RBP11.7□□□□□ -0.54
LSAMP-205ENST00000490035 CLIP1P30622 1438 aa11.7□□□□□ -0.54
LSAMP-205ENST00000490035 EIF4G2P78344 907 aaKnown RBP eCLIP11.69□□□□□ -0.54
LSAMP-205ENST00000490035 CHMP4BQ9H444 224 aaKnown RBP11.69□□□□□ -0.54
LSAMP-205ENST00000490035 GOLGA6L22H0YM25 854 aa11.69□□□□□ -0.54
LSAMP-205ENST00000490035 CDK11BP21127 795 aaKnown RBP11.68□□□□□ -0.54
LSAMP-205ENST00000490035 NCLP19338 710 aaKnown RBP11.67□□□□□ -0.54
LSAMP-205ENST00000490035 FAM9BQ8IZU0 186 aa11.66□□□□□ -0.54
LSAMP-205ENST00000490035 DDX10Q13206 875 aaKnown RBP11.65□□□□□ -0.54
LSAMP-205ENST00000490035 CEP164Q9UPV0 1460 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms