Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL6A3P12111 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
COL6A3P12111 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL6A3P12111 MFAP3L-203ENST00000393704 5827 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL6A3P12111 DLG2-201ENST00000280241 7730 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
COL6A3P12111 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL6A3P12111 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL6A3P12111 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL6A3P12111 HIVEP3-202ENST00000372584 12319 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL6A3P12111 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL6A3P12111 LRRC37BP1-201ENST00000398851 714 ntBASIC4.79□□□□□ -1.64
COL6A3P12111 MTND4LP20-201ENST00000402379 270 ntBASIC4.79□□□□□ -1.64
COL6A3P12111 AL031121.1-201ENST00000406553 254 ntBASIC4.79□□□□□ -1.64
COL6A3P12111 AC116036.1-201ENST00000412199 367 ntBASIC4.79□□□□□ -1.64
COL6A3P12111 RAB9AP3-201ENST00000412737 573 ntBASIC4.79□□□□□ -1.64
COL6A3P12111 RAB9AP1-201ENST00000449393 573 ntBASIC4.79□□□□□ -1.64
COL6A3P12111 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC4.79□□□□□ -1.64
COL6A3P12111 ILDR2-201ENST00000271417 13140 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL6A3P12111 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.79□□□□□ -1.64
COL6A3P12111 SLC12A1-202ENST00000380993 4707 ntAPPRIS P3 TSL 5 BASIC4.79□□□□□ -1.64
COL6A3P12111 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL6A3P12111 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC4.79□□□□□ -1.64
COL6A3P12111 KALRN-202ENST00000291478 10888 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL6A3P12111 AC024560.2-201ENST00000507981 1497 ntBASIC4.79□□□□□ -1.64
COL6A3P12111 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC4.79□□□□□ -1.64
COL6A3P12111 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL6A3P12111 SNORA5A-201ENST00000384111 134 ntBASIC4.79□□□□□ -1.64
COL6A3P12111 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
COL6A3P12111 BTF3P10-201ENST00000433415 495 ntBASIC4.79□□□□□ -1.64
COL6A3P12111 AC046176.1-201ENST00000435260 1170 ntBASIC4.79□□□□□ -1.64
COL6A3P12111 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.79□□□□□ -1.64
COL6A3P12111 RPS24P16-201ENST00000497294 392 ntBASIC4.79□□□□□ -1.64
COL6A3P12111 IFITM8P-201ENST00000522529 394 ntBASIC4.79□□□□□ -1.64
COL6A3P12111 AC067852.5-201ENST00000589299 310 ntBASIC4.79□□□□□ -1.64
COL6A3P12111 CYCSP1-201ENST00000604815 315 ntBASIC4.79□□□□□ -1.64
COL6A3P12111 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC4.79□□□□□ -1.64
COL6A3P12111 CLASP1-203ENST00000409078 8002 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
COL6A3P12111 NAV2-213ENST00000533917 5084 ntTSL 2 BASIC4.79□□□□□ -1.64
COL6A3P12111 EIF2AP4-201ENST00000424793 1781 ntBASIC4.79□□□□□ -1.64
COL6A3P12111 WDR87-201ENST00000303868 8847 ntAPPRIS P3 TSL 2 BASIC4.79□□□□□ -1.64
COL6A3P12111 ATF7-202ENST00000456903 5218 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
COL6A3P12111 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL6A3P12111 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL6A3P12111 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL6A3P12111 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL6A3P12111 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL6A3P12111 RPL37P3-201ENST00000456825 293 ntBASIC4.78□□□□□ -1.64
COL6A3P12111 AC091868.1-201ENST00000508746 304 ntBASIC4.78□□□□□ -1.64
COL6A3P12111 MIR5685-201ENST00000579080 79 ntBASIC4.78□□□□□ -1.64
COL6A3P12111 EIF4A2P1-201ENST00000587313 1063 ntBASIC4.78□□□□□ -1.64
COL6A3P12111 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL6A3P12111 ZNF521-203ENST00000538137 4253 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
COL6A3P12111 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
COL6A3P12111 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL6A3P12111 ATP2B4-203ENST00000357681 8968 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL6A3P12111 MMACHC-201ENST00000401061 5296 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
COL6A3P12111 KCNMA1-266ENST00000639601 11920 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
COL6A3P12111 ATXN3-216ENST00000545170 6950 ntTSL 5 BASIC4.78□□□□□ -1.64
COL6A3P12111 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL6A3P12111 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL6A3P12111 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC4.78□□□□□ -1.64
COL6A3P12111 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC4.78□□□□□ -1.64
COL6A3P12111 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC4.78□□□□□ -1.64
COL6A3P12111 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL6A3P12111 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.78□□□□□ -1.64
COL6A3P12111 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC4.78□□□□□ -1.64
COL6A3P12111 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL6A3P12111 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL6A3P12111 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.78□□□□□ -1.64
COL6A3P12111 AC006994.1-201ENST00000438212 839 ntBASIC4.78□□□□□ -1.64
COL6A3P12111 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC4.78□□□□□ -1.64
COL6A3P12111 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC4.78□□□□□ -1.64
COL6A3P12111 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.78□□□□□ -1.64
COL6A3P12111 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC4.78□□□□□ -1.64
COL6A3P12111 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC4.78□□□□□ -1.64
COL6A3P12111 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC4.78□□□□□ -1.64
COL6A3P12111 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC4.78□□□□□ -1.64
COL6A3P12111 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC4.78□□□□□ -1.64
COL6A3P12111 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL6A3P12111 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.78□□□□□ -1.64
COL6A3P12111 AC079097.1-201ENST00000512187 1399 ntBASIC4.78□□□□□ -1.64
COL6A3P12111 A2ML1-201ENST00000299698 5274 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL6A3P12111 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC4.78□□□□□ -1.64
COL6A3P12111 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC4.78□□□□□ -1.64
COL6A3P12111 LHX9-201ENST00000367387 7836 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL6A3P12111 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
COL6A3P12111 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
COL6A3P12111 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.78□□□□□ -1.64
COL6A3P12111 AC108467.2-201ENST00000617640 1597 ntBASIC4.78□□□□□ -1.64
COL6A3P12111 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.78□□□□□ -1.64
COL6A3P12111 LINC01776-201ENST00000418344 2229 ntTSL 2 BASIC4.77□□□□□ -1.65
COL6A3P12111 AC008171.1-201ENST00000395058 200 ntBASIC4.77□□□□□ -1.65
COL6A3P12111 AL390316.1-201ENST00000406279 553 ntBASIC4.77□□□□□ -1.65
COL6A3P12111 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC4.77□□□□□ -1.65
COL6A3P12111 MTND6P6-201ENST00000478031 263 ntBASIC4.77□□□□□ -1.65
COL6A3P12111 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC4.77□□□□□ -1.65
COL6A3P12111 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC4.77□□□□□ -1.65
COL6A3P12111 AP001804.2-201ENST00000533932 910 ntBASIC4.77□□□□□ -1.65
COL6A3P12111 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.77□□□□□ -1.65
COL6A3P12111 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 118.7 ms