Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC7.88□□□□□ -1.15
COL9A1P20849 AC087257.2-201ENST00000538759 928 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 AC123904.2-201ENST00000548059 300 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 AL031846.1-201ENST00000560933 314 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 AC137056.1-202ENST00000575772 753 ntTSL 2 BASIC7.88□□□□□ -1.15
COL9A1P20849 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC7.88□□□□□ -1.15
COL9A1P20849 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC7.88□□□□□ -1.15
COL9A1P20849 AF038458.1-201ENST00000588406 262 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC7.88□□□□□ -1.15
COL9A1P20849 OR5AH1P-201ENST00000595968 283 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC7.88□□□□□ -1.15
COL9A1P20849 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC7.88□□□□□ -1.15
COL9A1P20849 AC104695.2-201ENST00000605056 775 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 AC018889.1-201ENST00000605372 397 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL9A1P20849 AC243312.2-201ENST00000623340 601 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 AC140479.4-205ENST00000636339 820 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 CSNK1A1-204ENST00000504676 1772 ntTSL 2 BASIC7.88□□□□□ -1.15
COL9A1P20849 AC093909.5-201ENST00000621839 1799 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 LINC01012-204ENST00000629732 2771 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
COL9A1P20849 CNTNAP4-202ENST00000377504 4723 ntTSL 5 BASIC7.88□□□□□ -1.15
COL9A1P20849 REG1CP-205ENST00000444841 1710 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
COL9A1P20849 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL9A1P20849 CD274-202ENST00000381577 3644 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL9A1P20849 DPH6-202ENST00000440392 3648 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
COL9A1P20849 ARHGEF9-222ENST00000636048 5059 ntTSL 5 BASIC7.88□□□□□ -1.15
COL9A1P20849 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
COL9A1P20849 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC7.88□□□□□ -1.15
COL9A1P20849 MPZL3-201ENST00000278949 3968 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL9A1P20849 MAP3K7CL-202ENST00000339024 2066 ntAPPRIS P1 TSL 2 BASIC7.88□□□□□ -1.15
COL9A1P20849 MAP3K7CL-208ENST00000399935 2093 ntAPPRIS P1 TSL 2 BASIC7.88□□□□□ -1.15
COL9A1P20849 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC7.88□□□□□ -1.15
COL9A1P20849 MYH2-204ENST00000532183 2528 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
COL9A1P20849 VPS13A-203ENST00000360280 15320 ntAPPRIS P4 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL9A1P20849 MTND5P28-201ENST00000438005 1594 ntBASIC7.88□□□□□ -1.15
COL9A1P20849 LCA5-203ENST00000467898 2894 ntTSL 5 BASIC7.88□□□□□ -1.15
COL9A1P20849 UBE2V1-223ENST00000617119 2432 ntTSL 4 BASIC7.88□□□□□ -1.15
COL9A1P20849 LINC01876-209ENST00000638047 1983 ntTSL 5 BASIC7.88□□□□□ -1.15
COL9A1P20849 ERG-210ENST00000442448 5034 ntTSL 5 BASIC7.88□□□□□ -1.15
COL9A1P20849 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
COL9A1P20849 VPS8-204ENST00000424463 2359 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
COL9A1P20849 NUP37-209ENST00000552283 2372 ntAPPRIS P1 TSL 5 BASIC7.88□□□□□ -1.15
COL9A1P20849 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC7.87□□□□□ -1.15
COL9A1P20849 NF1P8-201ENST00000415351 1461 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 ACTR3BP5-201ENST00000448440 1479 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 IL18RAP-202ENST00000409369 1890 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
COL9A1P20849 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC7.87□□□□□ -1.15
COL9A1P20849 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL9A1P20849 MTMR3-205ENST00000406629 3758 ntTSL 5 BASIC7.87□□□□□ -1.15
COL9A1P20849 AL357556.1-201ENST00000421884 1388 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC7.87□□□□□ -1.15
COL9A1P20849 AC012513.3-201ENST00000623250 2116 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 PTCD3-201ENST00000254630 6734 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL9A1P20849 ZNF652P1-201ENST00000442420 1309 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 SAMMSON-210ENST00000641260 1308 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 ACSL1-211ENST00000515030 3948 ntAPPRIS P3 TSL 5 BASIC7.87□□□□□ -1.15
COL9A1P20849 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
COL9A1P20849 PSG8-203ENST00000404209 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL9A1P20849 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC7.87□□□□□ -1.15
COL9A1P20849 LALBA-201ENST00000301046 728 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL9A1P20849 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC7.87□□□□□ -1.15
COL9A1P20849 RNU1-122P-201ENST00000365538 156 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 RNU4-48P-201ENST00000365559 182 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 WDR78-203ENST00000371026 3848 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL9A1P20849 RNU1-11P-201ENST00000383975 164 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 RNU6-38P-201ENST00000384085 107 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 PTMAP8-201ENST00000397729 342 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 FDPSP5-201ENST00000399474 1057 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 HSD17B7P1-201ENST00000412419 1017 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC7.87□□□□□ -1.15
COL9A1P20849 AC006548.1-201ENST00000427470 102 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC7.87□□□□□ -1.15
COL9A1P20849 AL391361.2-203ENST00000443380 413 ntTSL 2 BASIC7.87□□□□□ -1.15
COL9A1P20849 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC7.87□□□□□ -1.15
COL9A1P20849 MGAT2P1-201ENST00000449718 797 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 RNU6-333P-201ENST00000459117 107 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 AC234782.3-201ENST00000461229 433 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 AC090142.1-201ENST00000465776 462 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
COL9A1P20849 RPS4XP14-201ENST00000493072 781 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 AL035404.1-201ENST00000497982 568 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC7.87□□□□□ -1.15
COL9A1P20849 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC7.87□□□□□ -1.15
COL9A1P20849 RNU2-53P-201ENST00000516257 147 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 RNU6-566P-201ENST00000516790 107 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 RNU6-1088P-201ENST00000516850 104 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC7.87□□□□□ -1.15
COL9A1P20849 IGKV3-34-201ENST00000521692 293 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC7.87□□□□□ -1.15
COL9A1P20849 MIR4790-201ENST00000577799 79 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 SKA2-207ENST00000583380 583 ntTSL 5 BASIC7.87□□□□□ -1.15
COL9A1P20849 MIR3942-201ENST00000585264 109 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 IGKV1OR1-1-201ENST00000613775 347 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 uc_338.29-201ENST00000615099 168 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 AC091953.2-201ENST00000623979 160 ntBASIC7.87□□□□□ -1.15
COL9A1P20849 SERBP1-203ENST00000370994 6676 ntAPPRIS P3 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL9A1P20849 STAMBP-202ENST00000394070 6691 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL9A1P20849 CELF1-215ENST00000532048 3044 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
COL9A1P20849 LUZP1-202ENST00000314174 3715 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
COL9A1P20849 FOXR2-201ENST00000339140 1926 ntAPPRIS P1 BASIC7.87□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms