RNA–Protein interactions for RNA: ENST00000365559.1

RNU4-48P-201, Transcript of RNA, U4 small nuclear 48, pseudogene, humanhuman

BASIC

Gene RNU4-48P, Length 182 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-48P-201ENST00000365559 AEBP2Q6ZN18 517 aaPredicted RBP18.02■□□□□ 0.48
RNU4-48P-201ENST00000365559 CHIC1Q5VXU3 224 aa17.55■□□□□ 0.4
RNU4-48P-201ENST00000365559 PHF23Q9BUL5 403 aaPredicted RBP15.48■□□□□ 0.07
RNU4-48P-201ENST00000365559 SENP3Q9H4L4 574 aaPredicted RBP15.23■□□□□ 0.03
RNU4-48P-201ENST00000365559 PLPPR3Q6T4P5 718 aa14.24□□□□□ -0.13
RNU4-48P-201ENST00000365559 FOXD1Q16676 465 aa14.17□□□□□ -0.14
RNU4-48P-201ENST00000365559 PPP6R1Q9UPN7 881 aa13.67□□□□□ -0.22
RNU4-48P-201ENST00000365559 ADRA2BP18089 450 aa13.64□□□□□ -0.23
RNU4-48P-201ENST00000365559 PIAS4Q8N2W9 510 aaPredicted RBP13.35□□□□□ -0.27
RNU4-48P-201ENST00000365559 MSH5O43196 834 aa13.02□□□□□ -0.33
RNU4-48P-201ENST00000365559 PPP4R3CPQ6ZMV5 832 aa12.56□□□□□ -0.4
RNU4-48P-201ENST00000365559 SCAF1Q9H7N4 1312 aaKnown RBP12.4□□□□□ -0.42
RNU4-48P-201ENST00000365559 MAPK8IP2Q13387 824 aaPredicted RBP12.39□□□□□ -0.43
RNU4-48P-201ENST00000365559 KCNA4P22459 653 aa12.3□□□□□ -0.44
RNU4-48P-201ENST00000365559 NCBP3Q53F19 620 aaKnown RBP12.2□□□□□ -0.46
RNU4-48P-201ENST00000365559 CNKSR2Q8WXI2 1034 aa12.19□□□□□ -0.46
RNU4-48P-201ENST00000365559 DMRT2Q9Y5R5 561 aa12.17□□□□□ -0.46
RNU4-48P-201ENST00000365559 NPM3O75607 178 aaKnown RBP12.08□□□□□ -0.48
RNU4-48P-201ENST00000365559 RNF216Q9NWF9 866 aaPredicted RBP11.96□□□□□ -0.49
RNU4-48P-201ENST00000365559 HOXD11P31277 338 aaPredicted RBP11.91□□□□□ -0.5
RNU4-48P-201ENST00000365559 POTEDQ86YR6 584 aa11.9□□□□□ -0.5
RNU4-48P-201ENST00000365559 SLC4A1APQ9BWU0 796 aaKnown RBP11.69□□□□□ -0.54
RNU4-48P-201ENST00000365559 DNAJC5BQ9UF47 199 aa11.68□□□□□ -0.54
RNU4-48P-201ENST00000365559 DCAF8L1A6NGE4 600 aa11.65□□□□□ -0.54
RNU4-48P-201ENST00000365559 SLC4A2P04920 1241 aa11.41□□□□□ -0.58
RNU4-48P-201ENST00000365559 EHMT2Q96KQ7 1210 aa11.39□□□□□ -0.59
RNU4-48P-201ENST00000365559 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.36□□□□□ -0.59
RNU4-48P-201ENST00000365559 ZBTB22O15209 634 aa11.35□□□□□ -0.59
RNU4-48P-201ENST00000365559 FOXD4L1Q9NU39 408 aa11.29□□□□□ -0.6
RNU4-48P-201ENST00000365559 CSRNP3Q8WYN3 585 aa11.26□□□□□ -0.61
RNU4-48P-201ENST00000365559 U3KPZ7 1027 aaPredicted RBP11.2□□□□□ -0.62
RNU4-48P-201ENST00000365559 RNF39Q9H2S5 420 aa11.19□□□□□ -0.62
RNU4-48P-201ENST00000365559 MYCNP04198 464 aaPredicted RBP11.12□□□□□ -0.63
RNU4-48P-201ENST00000365559 C1QBPQ07021 282 aaKnown RBP11.03□□□□□ -0.64
RNU4-48P-201ENST00000365559 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.99□□□□□ -0.65
RNU4-48P-201ENST00000365559 HNRNPUL2Q1KMD3 747 aaKnown RBP10.99□□□□□ -0.65
RNU4-48P-201ENST00000365559 SAMD1Q6SPF0 538 aaPredicted RBP10.97□□□□□ -0.65
RNU4-48P-201ENST00000365559 SPINK5Q9NQ38 1064 aaPredicted RBP10.9□□□□□ -0.66
RNU4-48P-201ENST00000365559 ATF5Q9Y2D1 282 aaPredicted RBP10.89□□□□□ -0.67
RNU4-48P-201ENST00000365559 CACNB1Q02641 598 aaPredicted RBP10.88□□□□□ -0.67
RNU4-48P-201ENST00000365559 ATXN8OSP0DMR3 200 aa10.87□□□□□ -0.67
RNU4-48P-201ENST00000365559 APLP2Q06481 763 aa10.86□□□□□ -0.67
RNU4-48P-201ENST00000365559 CAPN15O75808 1086 aa10.83□□□□□ -0.68
RNU4-48P-201ENST00000365559 TRHP20396 242 aaPredicted RBP10.78□□□□□ -0.68
RNU4-48P-201ENST00000365559 ZNF219Q9P2Y4 722 aaPredicted RBP10.74□□□□□ -0.69
RNU4-48P-201ENST00000365559 DSG3P32926 999 aa10.65□□□□□ -0.7
RNU4-48P-201ENST00000365559 ABCB7O75027 752 aa10.64□□□□□ -0.71
RNU4-48P-201ENST00000365559 POLA2Q14181 598 aa10.61□□□□□ -0.71
RNU4-48P-201ENST00000365559 MKRN4PQ13434 485 aaPredicted RBP10.4□□□□□ -0.74
RNU4-48P-201ENST00000365559 ZBTB12Q9Y330 459 aaPredicted RBP10.38□□□□□ -0.75
RNU4-48P-201ENST00000365559 FBLN2P98095 1184 aa10.36□□□□□ -0.75
RNU4-48P-201ENST00000365559 OSCARQ8IYS5 282 aa10.26□□□□□ -0.77
RNU4-48P-201ENST00000365559 FKBP8Q14318 412 aa10.16□□□□□ -0.78
RNU4-48P-201ENST00000365559 SPDYE4A6NLX3 237 aa10.14□□□□□ -0.79
RNU4-48P-201ENST00000365559 SPDYE2BA6NHP3 402 aa10.12□□□□□ -0.79
RNU4-48P-201ENST00000365559 SPDYE6P0CI01 402 aa10.12□□□□□ -0.79
RNU4-48P-201ENST00000365559 SPDYE2Q495Y8 402 aa10.12□□□□□ -0.79
RNU4-48P-201ENST00000365559 RBM42Q9BTD8 480 aaKnown RBP10.1□□□□□ -0.79
RNU4-48P-201ENST00000365559 ZNF692Q9BU19 519 aaPredicted RBP10.1□□□□□ -0.79
RNU4-48P-201ENST00000365559 SSUH2Q9Y2M2 353 aa10.07□□□□□ -0.8
RNU4-48P-201ENST00000365559 AKT1S1Q96B36 256 aa10□□□□□ -0.81
RNU4-48P-201ENST00000365559 PABPN1Q86U42 306 aaKnown RBP eCLIP9.98□□□□□ -0.81
RNU4-48P-201ENST00000365559 PROM2Q8N271 834 aa9.98□□□□□ -0.81
RNU4-48P-201ENST00000365559 REM2Q8IYK8 340 aaPredicted RBP9.93□□□□□ -0.82
RNU4-48P-201ENST00000365559 PITPNM1O00562 1244 aa9.82□□□□□ -0.84
RNU4-48P-201ENST00000365559 SPDYE1Q8NFV5 336 aaPredicted RBP9.82□□□□□ -0.84
RNU4-48P-201ENST00000365559 CLEC11AQ9Y240 323 aa9.8□□□□□ -0.84
RNU4-48P-201ENST00000365559 STAG3Q9UJ98 1225 aa9.76□□□□□ -0.85
RNU4-48P-201ENST00000365559 FBXO3Q9UK99 471 aa9.75□□□□□ -0.85
RNU4-48P-201ENST00000365559 CHRDL2Q6WN34 429 aa9.72□□□□□ -0.85
RNU4-48P-201ENST00000365559 PRR29P0C7W0 189 aa9.7□□□□□ -0.86
RNU4-48P-201ENST00000365559 VASPP50552 380 aaPredicted RBP9.66□□□□□ -0.86
RNU4-48P-201ENST00000365559 FXR2P51116 673 aaKnown RBP eCLIP9.62□□□□□ -0.87
RNU4-48P-201ENST00000365559 MIER1Q8N108 512 aa9.61□□□□□ -0.87
RNU4-48P-201ENST00000365559 PIP4P2Q8N4L2 257 aa9.61□□□□□ -0.87
RNU4-48P-201ENST00000365559 CREBZFQ9NS37 354 aa9.61□□□□□ -0.87
RNU4-48P-201ENST00000365559 PLCD3Q8N3E9 789 aa9.59□□□□□ -0.87
RNU4-48P-201ENST00000365559 CHADLQ6NUI6 762 aa9.58□□□□□ -0.88
RNU4-48P-201ENST00000365559 PRKAR2AP13861 404 aaKnown RBP9.56□□□□□ -0.88
RNU4-48P-201ENST00000365559 IFNLR1Q8IU57 520 aaPredicted RBP9.55□□□□□ -0.88
RNU4-48P-201ENST00000365559 PLEKHG5O94827 1062 aa9.51□□□□□ -0.89
RNU4-48P-201ENST00000365559 MNX1P50219 401 aaPredicted RBP9.51□□□□□ -0.89
RNU4-48P-201ENST00000365559 KLHL34Q8N239 644 aa9.48□□□□□ -0.89
RNU4-48P-201ENST00000365559 FARP1Q9Y4F1 1045 aaPredicted RBP9.48□□□□□ -0.89
RNU4-48P-201ENST00000365559 ZBTB47Q9UFB7 747 aaPredicted RBP9.45□□□□□ -0.9
RNU4-48P-201ENST00000365559 POTEHQ6S545 545 aa9.41□□□□□ -0.9
RNU4-48P-201ENST00000365559 NPM1P06748 294 aaKnown RBP eCLIP9.4□□□□□ -0.9
RNU4-48P-201ENST00000365559 SPOCK2Q92563 424 aa9.4□□□□□ -0.9
RNU4-48P-201ENST00000365559 NUBP1P53384 320 aa9.38□□□□□ -0.91
RNU4-48P-201ENST00000365559 RASEFQ8IZ41 740 aa9.35□□□□□ -0.91
RNU4-48P-201ENST00000365559 C19orf67A6NJJ6 358 aa9.3□□□□□ -0.92
RNU4-48P-201ENST00000365559 CD44P16070 742 aaKnown RBP9.29□□□□□ -0.92
RNU4-48P-201ENST00000365559 TSPYL2Q9H2G4 693 aaPredicted RBP9.29□□□□□ -0.92
RNU4-48P-201ENST00000365559 HAX1O00165 279 aa9.28□□□□□ -0.92
RNU4-48P-201ENST00000365559 DCAF8Q5TAQ9 597 aa9.27□□□□□ -0.93
RNU4-48P-201ENST00000365559 FAM212AQ96EL1 285 aa9.27□□□□□ -0.93
RNU4-48P-201ENST00000365559 CIZ1Q9ULV3 898 aaPredicted RBP9.27□□□□□ -0.93
RNU4-48P-201ENST00000365559 EVX2Q03828 476 aa9.26□□□□□ -0.93
RNU4-48P-201ENST00000365559 RTN4Q9NQC3 1192 aaKnown RBP9.26□□□□□ -0.93
RNU4-48P-201ENST00000365559 GSE1Q14687 1217 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 114.7 ms