Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SOCS5P3-201ENST00000425115 1576 ntBASIC4.86□□□□□ -1.63
COL6A3P12111 RN7SL293P-201ENST00000481765 281 ntBASIC4.86□□□□□ -1.63
COL6A3P12111 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC4.86□□□□□ -1.63
COL6A3P12111 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC4.86□□□□□ -1.63
COL6A3P12111 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC4.86□□□□□ -1.63
COL6A3P12111 AC090912.3-201ENST00000609775 533 ntBASIC4.86□□□□□ -1.63
COL6A3P12111 AL049794.2-201ENST00000616301 365 ntBASIC4.86□□□□□ -1.63
COL6A3P12111 BMPR1A-201ENST00000372037 11255 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A3P12111 VPS8-227ENST00000625842 4969 ntAPPRIS P4 TSL 5 BASIC4.86□□□□□ -1.63
COL6A3P12111 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A3P12111 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A3P12111 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A3P12111 SPATA13-201ENST00000343003 6405 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
COL6A3P12111 ERG-204ENST00000398907 4809 ntTSL 5 BASIC4.86□□□□□ -1.63
COL6A3P12111 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A3P12111 CARD8-202ENST00000391898 5263 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A3P12111 KIF13A-203ENST00000378814 6924 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A3P12111 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A3P12111 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
COL6A3P12111 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A3P12111 ATP5F1P4-201ENST00000397288 746 ntBASIC4.86□□□□□ -1.63
COL6A3P12111 TBCAP2-201ENST00000416175 326 ntBASIC4.86□□□□□ -1.63
COL6A3P12111 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC4.86□□□□□ -1.63
COL6A3P12111 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC4.86□□□□□ -1.63
COL6A3P12111 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.86□□□□□ -1.63
COL6A3P12111 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.86□□□□□ -1.63
COL6A3P12111 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC4.86□□□□□ -1.63
COL6A3P12111 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC4.86□□□□□ -1.63
COL6A3P12111 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.86□□□□□ -1.63
COL6A3P12111 UGP2-232ENST00000640075 567 ntTSL 5 BASIC4.86□□□□□ -1.63
COL6A3P12111 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A3P12111 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A3P12111 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
COL6A3P12111 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
COL6A3P12111 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A3P12111 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC4.86□□□□□ -1.63
COL6A3P12111 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
COL6A3P12111 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.86□□□□□ -1.63
COL6A3P12111 RNA5SP130-201ENST00000364431 114 ntBASIC4.86□□□□□ -1.63
COL6A3P12111 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.86□□□□□ -1.63
COL6A3P12111 AL162151.2-201ENST00000448875 158 ntBASIC4.86□□□□□ -1.63
COL6A3P12111 RN7SL189P-201ENST00000468631 289 ntBASIC4.86□□□□□ -1.63
COL6A3P12111 Y_RNA.673-201ENST00000516306 88 ntBASIC4.86□□□□□ -1.63
COL6A3P12111 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC4.86□□□□□ -1.63
COL6A3P12111 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC4.86□□□□□ -1.63
COL6A3P12111 BNIP3P10-201ENST00000605360 577 ntBASIC4.86□□□□□ -1.63
COL6A3P12111 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.86□□□□□ -1.63
COL6A3P12111 AL161756.1-201ENST00000555861 1751 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL6A3P12111 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL6A3P12111 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC4.85□□□□□ -1.63
COL6A3P12111 ZNF812P-201ENST00000457674 1694 ntBASIC4.85□□□□□ -1.63
COL6A3P12111 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL6A3P12111 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
COL6A3P12111 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL6A3P12111 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
COL6A3P12111 CTNND1-205ENST00000399050 6313 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
COL6A3P12111 RN7SKP267-201ENST00000410381 285 ntBASIC4.85□□□□□ -1.63
COL6A3P12111 AC104306.1-201ENST00000449702 371 ntBASIC4.85□□□□□ -1.63
COL6A3P12111 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC4.85□□□□□ -1.63
COL6A3P12111 AC019206.1-201ENST00000621938 425 ntBASIC4.85□□□□□ -1.63
COL6A3P12111 AL355834.1-201ENST00000556602 3965 ntBASIC4.85□□□□□ -1.63
COL6A3P12111 CLASP1-215ENST00000541377 7909 ntTSL 5 BASIC4.85□□□□□ -1.63
COL6A3P12111 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL6A3P12111 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
COL6A3P12111 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.85□□□□□ -1.63
COL6A3P12111 USP45-204ENST00000369233 2514 ntTSL 5 BASIC4.85□□□□□ -1.63
COL6A3P12111 PCDH15-226ENST00000613657 6329 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
COL6A3P12111 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC4.85□□□□□ -1.63
COL6A3P12111 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL6A3P12111 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC4.85□□□□□ -1.63
COL6A3P12111 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.85□□□□□ -1.63
COL6A3P12111 PPIAP3-201ENST00000450588 505 ntBASIC4.85□□□□□ -1.63
COL6A3P12111 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
COL6A3P12111 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC4.85□□□□□ -1.63
COL6A3P12111 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC4.85□□□□□ -1.63
COL6A3P12111 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.85□□□□□ -1.63
COL6A3P12111 AP005019.3-201ENST00000620418 560 ntBASIC4.85□□□□□ -1.63
COL6A3P12111 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC4.85□□□□□ -1.63
COL6A3P12111 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC4.85□□□□□ -1.63
COL6A3P12111 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL6A3P12111 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC4.84□□□□□ -1.63
COL6A3P12111 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC4.84□□□□□ -1.63
COL6A3P12111 ZNF793-208ENST00000588578 4549 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
COL6A3P12111 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
COL6A3P12111 LINC01268-201ENST00000434296 2755 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
COL6A3P12111 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC4.84□□□□□ -1.63
COL6A3P12111 RNA5SP513-201ENST00000364648 118 ntBASIC4.84□□□□□ -1.63
COL6A3P12111 MIR589-201ENST00000385238 99 ntBASIC4.84□□□□□ -1.63
COL6A3P12111 USP24P1-201ENST00000433802 779 ntBASIC4.84□□□□□ -1.63
COL6A3P12111 NOTCH2P1-201ENST00000443481 624 ntBASIC4.84□□□□□ -1.63
COL6A3P12111 AP001486.1-201ENST00000463339 476 ntBASIC4.84□□□□□ -1.63
COL6A3P12111 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.84□□□□□ -1.63
COL6A3P12111 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL6A3P12111 CECR2-206ENST00000612582 9645 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
COL6A3P12111 LRP2BP-201ENST00000328559 5157 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
COL6A3P12111 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC4.84□□□□□ -1.63
COL6A3P12111 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC4.84□□□□□ -1.63
COL6A3P12111 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
COL6A3P12111 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.84□□□□□ -1.63
COL6A3P12111 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms