Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL589794.1-201ENST00000424971 390 ntBASIC6.82□□□□□ -1.32
LIG3P49916 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC6.82□□□□□ -1.32
LIG3P49916 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC6.82□□□□□ -1.32
LIG3P49916 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC6.82□□□□□ -1.32
LIG3P49916 MTATP6P23-201ENST00000440153 476 ntBASIC6.82□□□□□ -1.32
LIG3P49916 AL353572.1-201ENST00000442490 417 ntBASIC6.82□□□□□ -1.32
LIG3P49916 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
LIG3P49916 MTCO3P11-201ENST00000455103 774 ntBASIC6.82□□□□□ -1.32
LIG3P49916 ANK3-207ENST00000460468 677 ntTSL 3 BASIC6.82□□□□□ -1.32
LIG3P49916 RPS7P7-201ENST00000463499 571 ntBASIC6.82□□□□□ -1.32
LIG3P49916 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC6.82□□□□□ -1.32
LIG3P49916 RN7SL187P-201ENST00000495587 303 ntBASIC6.82□□□□□ -1.32
LIG3P49916 MTERF4-220ENST00000495694 909 ntTSL 5 BASIC6.82□□□□□ -1.32
LIG3P49916 AC104685.1-201ENST00000502445 371 ntBASIC6.82□□□□□ -1.32
LIG3P49916 AC022126.1-201ENST00000502995 593 ntTSL 4 BASIC6.82□□□□□ -1.32
LIG3P49916 DYNLL1P6-201ENST00000503440 264 ntBASIC6.82□□□□□ -1.32
LIG3P49916 MRPL57P6-201ENST00000506570 309 ntBASIC6.82□□□□□ -1.32
LIG3P49916 CYP4F27P-201ENST00000514557 494 ntBASIC6.82□□□□□ -1.32
LIG3P49916 DUXAP2-201ENST00000519198 589 ntBASIC6.82□□□□□ -1.32
LIG3P49916 BAALC-AS1-208ENST00000523614 582 ntTSL 5 BASIC6.82□□□□□ -1.32
LIG3P49916 AC006065.4-204ENST00000537478 654 ntTSL 2 BASIC6.82□□□□□ -1.32
LIG3P49916 AC006065.4-203ENST00000541065 526 ntTSL 2 BASIC6.82□□□□□ -1.32
LIG3P49916 AC140063.1-201ENST00000541343 259 ntBASIC6.82□□□□□ -1.32
LIG3P49916 DUX4L52-201ENST00000549363 777 ntBASIC6.82□□□□□ -1.32
LIG3P49916 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC6.82□□□□□ -1.32
LIG3P49916 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC6.82□□□□□ -1.32
LIG3P49916 AL133241.1-201ENST00000556832 487 ntBASIC6.82□□□□□ -1.32
LIG3P49916 AC087481.2-201ENST00000565492 330 ntBASIC6.82□□□□□ -1.32
LIG3P49916 SS18L2P2-201ENST00000583960 235 ntBASIC6.82□□□□□ -1.32
LIG3P49916 RPS11-205ENST00000599561 430 ntTSL 5 BASIC6.82□□□□□ -1.32
LIG3P49916 AC005479.3-201ENST00000602790 431 ntBASIC6.82□□□□□ -1.32
LIG3P49916 TCL6_3.1-201ENST00000619064 137 ntBASIC6.82□□□□□ -1.32
LIG3P49916 AC025287.2-201ENST00000621911 668 ntBASIC6.82□□□□□ -1.32
LIG3P49916 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC6.82□□□□□ -1.32
LIG3P49916 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC6.82□□□□□ -1.32
LIG3P49916 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC6.82□□□□□ -1.32
LIG3P49916 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
LIG3P49916 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
LIG3P49916 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC6.82□□□□□ -1.32
LIG3P49916 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
LIG3P49916 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC6.82□□□□□ -1.32
LIG3P49916 IMPG1-201ENST00000369950 3558 ntAPPRIS P3 TSL 1 (best) BASIC6.82□□□□□ -1.32
LIG3P49916 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC6.82□□□□□ -1.32
LIG3P49916 USP50-203ENST00000532404 1386 ntAPPRIS P2 TSL 5 BASIC6.82□□□□□ -1.32
LIG3P49916 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
LIG3P49916 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
LIG3P49916 AF121898.1-201ENST00000440763 1860 ntTSL 5 BASIC6.81□□□□□ -1.32
LIG3P49916 SCARB2-207ENST00000638295 4507 ntTSL 5 BASIC6.81□□□□□ -1.32
LIG3P49916 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC6.81□□□□□ -1.32
LIG3P49916 AC109315.1-201ENST00000584143 1347 ntBASIC6.81□□□□□ -1.32
LIG3P49916 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC6.81□□□□□ -1.32
LIG3P49916 Z99496.1-201ENST00000469424 1477 ntBASIC6.81□□□□□ -1.32
LIG3P49916 AC010401.2-201ENST00000575137 4934 ntBASIC6.81□□□□□ -1.32
LIG3P49916 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC6.81□□□□□ -1.32
LIG3P49916 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
LIG3P49916 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
LIG3P49916 RNU6-621P-201ENST00000364752 109 ntBASIC6.81□□□□□ -1.32
LIG3P49916 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC6.81□□□□□ -1.32
LIG3P49916 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC6.81□□□□□ -1.32
LIG3P49916 XAGE3-202ENST00000375491 489 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
LIG3P49916 IGKV3-7-201ENST00000390247 445 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
LIG3P49916 SDHC-203ENST00000392169 369 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
LIG3P49916 AL360271.1-201ENST00000395679 510 ntBASIC6.81□□□□□ -1.32
LIG3P49916 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC6.81□□□□□ -1.32
LIG3P49916 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC6.81□□□□□ -1.32
LIG3P49916 AL391811.1-201ENST00000416908 423 ntTSL 3 BASIC6.81□□□□□ -1.32
LIG3P49916 PTP4A1P1-201ENST00000420539 515 ntBASIC6.81□□□□□ -1.32
LIG3P49916 FGF13-AS1-201ENST00000438238 849 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
LIG3P49916 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC6.81□□□□□ -1.32
LIG3P49916 AL121578.2-201ENST00000448797 447 ntBASIC6.81□□□□□ -1.32
LIG3P49916 RPL36AP33-201ENST00000450395 310 ntBASIC6.81□□□□□ -1.32
LIG3P49916 VNN3-210ENST00000450865 596 ntTSL 4 BASIC6.81□□□□□ -1.32
LIG3P49916 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC6.81□□□□□ -1.32
LIG3P49916 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC6.81□□□□□ -1.32
LIG3P49916 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC6.81□□□□□ -1.32
LIG3P49916 RPS3AP49-201ENST00000472161 790 ntBASIC6.81□□□□□ -1.32
LIG3P49916 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
LIG3P49916 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC6.81□□□□□ -1.32
LIG3P49916 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC6.81□□□□□ -1.32
LIG3P49916 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC6.81□□□□□ -1.32
LIG3P49916 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC6.81□□□□□ -1.32
LIG3P49916 AC026785.3-201ENST00000511182 285 ntTSL 2 BASIC6.81□□□□□ -1.32
LIG3P49916 AC011352.2-201ENST00000514574 1016 ntBASIC6.81□□□□□ -1.32
LIG3P49916 LINC02482-202ENST00000515205 422 ntTSL 2 BASIC6.81□□□□□ -1.32
LIG3P49916 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC6.81□□□□□ -1.32
LIG3P49916 AP002812.4-201ENST00000532139 286 ntBASIC6.81□□□□□ -1.32
LIG3P49916 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC6.81□□□□□ -1.32
LIG3P49916 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC6.81□□□□□ -1.32
LIG3P49916 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC6.81□□□□□ -1.32
LIG3P49916 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
LIG3P49916 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
LIG3P49916 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC6.81□□□□□ -1.32
LIG3P49916 AC084782.2-201ENST00000561934 839 ntTSL 3 BASIC6.81□□□□□ -1.32
LIG3P49916 AC013640.1-201ENST00000565366 565 ntTSL 3 BASIC6.81□□□□□ -1.32
LIG3P49916 APOOP5-203ENST00000565921 410 ntTSL 3 BASIC6.81□□□□□ -1.32
LIG3P49916 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC6.81□□□□□ -1.32
LIG3P49916 ARGFXP2-201ENST00000579304 949 ntBASIC6.81□□□□□ -1.32
LIG3P49916 CTSLP2-201ENST00000580501 394 ntBASIC6.81□□□□□ -1.32
LIG3P49916 ABBA01006766.1-201ENST00000584728 294 ntBASIC6.81□□□□□ -1.32
LIG3P49916 AC012254.2-203ENST00000588705 561 ntAPPRIS P5 TSL 2 BASIC6.81□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms