Protein–RNA interactions for Protein: Q9UFD9

RIMBP3, RIMS-binding protein 3A, humanhuman

Predictions only

Length 1,639 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIMBP3Q9UFD9 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
RIMBP3Q9UFD9 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
RIMBP3Q9UFD9 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC31.31■■■□□ 2.6
RIMBP3Q9UFD9 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC31.31■■■□□ 2.6
RIMBP3Q9UFD9 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC31.31■■■□□ 2.6
RIMBP3Q9UFD9 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC31.31■■■□□ 2.6
RIMBP3Q9UFD9 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC31.31■■■□□ 2.6
RIMBP3Q9UFD9 AC010327.4-202ENST00000591484 748 ntBASIC31.31■■■□□ 2.6
RIMBP3Q9UFD9 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC31.31■■■□□ 2.6
RIMBP3Q9UFD9 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
RIMBP3Q9UFD9 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
RIMBP3Q9UFD9 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC31.31■■■□□ 2.6
RIMBP3Q9UFD9 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC31.31■■■□□ 2.6
RIMBP3Q9UFD9 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC31.31■■■□□ 2.6
RIMBP3Q9UFD9 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC31.31■■■□□ 2.6
RIMBP3Q9UFD9 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC31.31■■■□□ 2.6
RIMBP3Q9UFD9 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC31.31■■■□□ 2.6
RIMBP3Q9UFD9 AC104819.1-201ENST00000504587 486 ntBASIC31.31■■■□□ 2.6
RIMBP3Q9UFD9 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC31.31■■■□□ 2.6
RIMBP3Q9UFD9 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
RIMBP3Q9UFD9 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
RIMBP3Q9UFD9 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC31.3■■■□□ 2.6
RIMBP3Q9UFD9 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC31.3■■■□□ 2.6
RIMBP3Q9UFD9 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC31.3■■■□□ 2.6
RIMBP3Q9UFD9 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
RIMBP3Q9UFD9 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC31.3■■■□□ 2.6
RIMBP3Q9UFD9 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC31.3■■■□□ 2.6
RIMBP3Q9UFD9 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC31.3■■■□□ 2.6
RIMBP3Q9UFD9 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
RIMBP3Q9UFD9 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC31.29■■■□□ 2.6
RIMBP3Q9UFD9 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC31.29■■■□□ 2.6
RIMBP3Q9UFD9 DFFB-203ENST00000341385 572 ntTSL 5 BASIC31.29■■■□□ 2.6
RIMBP3Q9UFD9 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC31.29■■■□□ 2.6
RIMBP3Q9UFD9 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
RIMBP3Q9UFD9 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
RIMBP3Q9UFD9 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC31.29■■■□□ 2.6
RIMBP3Q9UFD9 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC31.28■■■□□ 2.6
RIMBP3Q9UFD9 AC034232.1-201ENST00000506026 1064 ntBASIC31.28■■■□□ 2.6
RIMBP3Q9UFD9 AF238378.1-201ENST00000526806 358 ntBASIC31.28■■■□□ 2.6
RIMBP3Q9UFD9 AC074051.2-201ENST00000565115 352 ntBASIC31.28■■■□□ 2.6
RIMBP3Q9UFD9 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
RIMBP3Q9UFD9 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
RIMBP3Q9UFD9 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC31.28■■■□□ 2.6
RIMBP3Q9UFD9 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
RIMBP3Q9UFD9 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
RIMBP3Q9UFD9 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
RIMBP3Q9UFD9 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC31.28■■■□□ 2.6
RIMBP3Q9UFD9 COMT-203ENST00000403184 2217 ntTSL 2 BASIC31.27■■■□□ 2.6
RIMBP3Q9UFD9 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
RIMBP3Q9UFD9 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC31.27■■■□□ 2.6
RIMBP3Q9UFD9 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC31.27■■■□□ 2.6
RIMBP3Q9UFD9 AC244107.1-201ENST00000442033 332 ntBASIC31.27■■■□□ 2.6
RIMBP3Q9UFD9 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
RIMBP3Q9UFD9 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
RIMBP3Q9UFD9 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
RIMBP3Q9UFD9 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC31.27■■■□□ 2.6
RIMBP3Q9UFD9 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
RIMBP3Q9UFD9 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC31.27■■■□□ 2.6
RIMBP3Q9UFD9 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
RIMBP3Q9UFD9 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC31.27■■■□□ 2.6
RIMBP3Q9UFD9 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
RIMBP3Q9UFD9 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
RIMBP3Q9UFD9 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
RIMBP3Q9UFD9 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC31.27■■■□□ 2.6
RIMBP3Q9UFD9 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC31.27■■■□□ 2.6
RIMBP3Q9UFD9 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC31.27■■■□□ 2.6
RIMBP3Q9UFD9 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC31.27■■■□□ 2.6
RIMBP3Q9UFD9 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC31.27■■■□□ 2.6
RIMBP3Q9UFD9 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC31.27■■■□□ 2.6
RIMBP3Q9UFD9 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC31.26■■■□□ 2.59
RIMBP3Q9UFD9 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC31.26■■■□□ 2.59
RIMBP3Q9UFD9 TPM1-218ENST00000559281 851 ntTSL 5 BASIC31.26■■■□□ 2.59
RIMBP3Q9UFD9 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC31.26■■■□□ 2.59
RIMBP3Q9UFD9 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
RIMBP3Q9UFD9 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
RIMBP3Q9UFD9 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC31.25■■■□□ 2.59
RIMBP3Q9UFD9 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC31.25■■■□□ 2.59
RIMBP3Q9UFD9 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC31.25■■■□□ 2.59
RIMBP3Q9UFD9 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
RIMBP3Q9UFD9 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
RIMBP3Q9UFD9 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
RIMBP3Q9UFD9 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
RIMBP3Q9UFD9 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
RIMBP3Q9UFD9 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
RIMBP3Q9UFD9 HLA-J-202ENST00000469281 1241 ntBASIC31.24■■■□□ 2.59
RIMBP3Q9UFD9 AC064862.7-201ENST00000604520 867 ntBASIC31.24■■■□□ 2.59
RIMBP3Q9UFD9 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC31.24■■■□□ 2.59
RIMBP3Q9UFD9 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
RIMBP3Q9UFD9 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
RIMBP3Q9UFD9 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
RIMBP3Q9UFD9 AL031284.1-201ENST00000419297 478 ntBASIC31.24■■■□□ 2.59
RIMBP3Q9UFD9 TSPY22P-201ENST00000427496 604 ntBASIC31.24■■■□□ 2.59
RIMBP3Q9UFD9 HLA-J-203ENST00000494367 1087 ntBASIC31.24■■■□□ 2.59
RIMBP3Q9UFD9 PIN1-206ENST00000587625 878 ntTSL 2 BASIC31.24■■■□□ 2.59
RIMBP3Q9UFD9 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC31.24■■■□□ 2.59
RIMBP3Q9UFD9 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
RIMBP3Q9UFD9 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
RIMBP3Q9UFD9 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC31.23■■■□□ 2.59
RIMBP3Q9UFD9 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
RIMBP3Q9UFD9 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC31.23■■■□□ 2.59
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms