Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CNTN3Q9P232 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC21.07■□□□□ 0.96
CNTN3Q9P232 MESTP1-201ENST00000404287 994 ntBASIC21.07■□□□□ 0.96
CNTN3Q9P232 RBM17P1-201ENST00000453646 1190 ntBASIC21.07■□□□□ 0.96
CNTN3Q9P232 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC21.07■□□□□ 0.96
CNTN3Q9P232 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC21.07■□□□□ 0.96
CNTN3Q9P232 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CNTN3Q9P232 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC21.07■□□□□ 0.96
CNTN3Q9P232 RPS20-210ENST00000523936 899 ntTSL 2 BASIC21.07■□□□□ 0.96
CNTN3Q9P232 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC21.07■□□□□ 0.96
CNTN3Q9P232 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC21.07■□□□□ 0.96
CNTN3Q9P232 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC21.07■□□□□ 0.96
CNTN3Q9P232 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CNTN3Q9P232 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.07■□□□□ 0.96
CNTN3Q9P232 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21.07■□□□□ 0.96
CNTN3Q9P232 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CNTN3Q9P232 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC21.07■□□□□ 0.96
CNTN3Q9P232 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
CNTN3Q9P232 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
CNTN3Q9P232 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
CNTN3Q9P232 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CNTN3Q9P232 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CNTN3Q9P232 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CNTN3Q9P232 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
CNTN3Q9P232 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CNTN3Q9P232 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CNTN3Q9P232 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CNTN3Q9P232 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC21.06■□□□□ 0.96
CNTN3Q9P232 AC131212.4-201ENST00000623606 975 ntBASIC21.06■□□□□ 0.96
CNTN3Q9P232 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
CNTN3Q9P232 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CNTN3Q9P232 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CNTN3Q9P232 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CNTN3Q9P232 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CNTN3Q9P232 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
CNTN3Q9P232 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC21.06■□□□□ 0.96
CNTN3Q9P232 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CNTN3Q9P232 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CNTN3Q9P232 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CNTN3Q9P232 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.05■□□□□ 0.96
CNTN3Q9P232 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC21.05■□□□□ 0.96
CNTN3Q9P232 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
CNTN3Q9P232 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CNTN3Q9P232 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CNTN3Q9P232 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC21.05■□□□□ 0.96
CNTN3Q9P232 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC21.05■□□□□ 0.96
CNTN3Q9P232 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC21.05■□□□□ 0.96
CNTN3Q9P232 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
CNTN3Q9P232 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CNTN3Q9P232 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
CNTN3Q9P232 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
CNTN3Q9P232 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CNTN3Q9P232 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CNTN3Q9P232 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CNTN3Q9P232 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.05■□□□□ 0.96
CNTN3Q9P232 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
CNTN3Q9P232 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CNTN3Q9P232 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
CNTN3Q9P232 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC21.04■□□□□ 0.96
CNTN3Q9P232 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC21.04■□□□□ 0.96
CNTN3Q9P232 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CNTN3Q9P232 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CNTN3Q9P232 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CNTN3Q9P232 UNC93B2-201ENST00000285383 730 ntBASIC21.04■□□□□ 0.96
CNTN3Q9P232 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CNTN3Q9P232 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CNTN3Q9P232 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CNTN3Q9P232 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC21.04■□□□□ 0.96
CNTN3Q9P232 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CNTN3Q9P232 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
CNTN3Q9P232 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC21.04■□□□□ 0.96
CNTN3Q9P232 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC21.04■□□□□ 0.96
CNTN3Q9P232 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC21.04■□□□□ 0.96
CNTN3Q9P232 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CNTN3Q9P232 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CNTN3Q9P232 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC21.04■□□□□ 0.96
CNTN3Q9P232 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CNTN3Q9P232 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC21.04■□□□□ 0.96
CNTN3Q9P232 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC21.04■□□□□ 0.96
CNTN3Q9P232 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC21.04■□□□□ 0.96
CNTN3Q9P232 AC079598.2-202ENST00000546624 1451 ntBASIC21.04■□□□□ 0.96
CNTN3Q9P232 FSCN1P1-201ENST00000568912 1481 ntBASIC21.04■□□□□ 0.96
CNTN3Q9P232 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.04■□□□□ 0.96
CNTN3Q9P232 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.04■□□□□ 0.96
CNTN3Q9P232 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CNTN3Q9P232 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CNTN3Q9P232 AC112907.3-201ENST00000577781 2400 ntBASIC21.04■□□□□ 0.96
CNTN3Q9P232 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CNTN3Q9P232 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CNTN3Q9P232 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CNTN3Q9P232 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
CNTN3Q9P232 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CNTN3Q9P232 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.03■□□□□ 0.96
CNTN3Q9P232 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CNTN3Q9P232 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CNTN3Q9P232 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
CNTN3Q9P232 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CNTN3Q9P232 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC21.03■□□□□ 0.96
CNTN3Q9P232 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
CNTN3Q9P232 AC087499.1-201ENST00000418141 1075 ntBASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms