Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
USP29Q9HBJ7 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
USP29Q9HBJ7 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
USP29Q9HBJ7 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP29Q9HBJ7 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
USP29Q9HBJ7 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
USP29Q9HBJ7 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP29Q9HBJ7 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
USP29Q9HBJ7 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.12■□□□□ 0.81
USP29Q9HBJ7 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
USP29Q9HBJ7 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC20.12■□□□□ 0.81
USP29Q9HBJ7 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
USP29Q9HBJ7 UNC93B4-201ENST00000505679 747 ntBASIC20.12■□□□□ 0.81
USP29Q9HBJ7 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP29Q9HBJ7 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
USP29Q9HBJ7 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
USP29Q9HBJ7 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.12■□□□□ 0.81
USP29Q9HBJ7 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
USP29Q9HBJ7 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
USP29Q9HBJ7 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
USP29Q9HBJ7 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC20.11■□□□□ 0.81
USP29Q9HBJ7 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
USP29Q9HBJ7 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP29Q9HBJ7 AC124283.5-201ENST00000624661 1809 ntBASIC20.11■□□□□ 0.81
USP29Q9HBJ7 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP29Q9HBJ7 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.11■□□□□ 0.81
USP29Q9HBJ7 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP29Q9HBJ7 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20.11■□□□□ 0.81
USP29Q9HBJ7 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
USP29Q9HBJ7 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.11■□□□□ 0.81
USP29Q9HBJ7 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
USP29Q9HBJ7 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
USP29Q9HBJ7 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
USP29Q9HBJ7 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP29Q9HBJ7 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP29Q9HBJ7 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP29Q9HBJ7 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP29Q9HBJ7 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.11■□□□□ 0.81
USP29Q9HBJ7 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP29Q9HBJ7 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
USP29Q9HBJ7 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.11■□□□□ 0.81
USP29Q9HBJ7 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP29Q9HBJ7 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
USP29Q9HBJ7 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
USP29Q9HBJ7 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
USP29Q9HBJ7 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP29Q9HBJ7 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USP29Q9HBJ7 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP29Q9HBJ7 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USP29Q9HBJ7 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.1■□□□□ 0.81
USP29Q9HBJ7 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP29Q9HBJ7 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.1■□□□□ 0.81
USP29Q9HBJ7 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP29Q9HBJ7 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.1■□□□□ 0.81
USP29Q9HBJ7 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20.1■□□□□ 0.81
USP29Q9HBJ7 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USP29Q9HBJ7 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP29Q9HBJ7 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.1■□□□□ 0.81
USP29Q9HBJ7 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP29Q9HBJ7 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.1■□□□□ 0.81
USP29Q9HBJ7 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP29Q9HBJ7 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
USP29Q9HBJ7 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USP29Q9HBJ7 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP29Q9HBJ7 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.1■□□□□ 0.81
USP29Q9HBJ7 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.1■□□□□ 0.81
USP29Q9HBJ7 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC20.1■□□□□ 0.81
USP29Q9HBJ7 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP29Q9HBJ7 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.09■□□□□ 0.81
USP29Q9HBJ7 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
USP29Q9HBJ7 AL020996.1-203ENST00000536896 2307 ntBASIC20.09■□□□□ 0.81
USP29Q9HBJ7 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
USP29Q9HBJ7 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.09■□□□□ 0.81
USP29Q9HBJ7 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP29Q9HBJ7 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
USP29Q9HBJ7 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP29Q9HBJ7 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
USP29Q9HBJ7 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP29Q9HBJ7 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.09■□□□□ 0.81
USP29Q9HBJ7 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP29Q9HBJ7 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.09■□□□□ 0.81
USP29Q9HBJ7 KRT17P3-201ENST00000420566 1262 ntBASIC20.09■□□□□ 0.81
USP29Q9HBJ7 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.09■□□□□ 0.81
USP29Q9HBJ7 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.09■□□□□ 0.81
USP29Q9HBJ7 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.09■□□□□ 0.81
USP29Q9HBJ7 PNMA6B-201ENST00000538162 1200 ntBASIC20.09■□□□□ 0.81
USP29Q9HBJ7 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC20.09■□□□□ 0.81
USP29Q9HBJ7 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.09■□□□□ 0.81
USP29Q9HBJ7 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.09■□□□□ 0.81
USP29Q9HBJ7 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.09■□□□□ 0.81
USP29Q9HBJ7 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.09■□□□□ 0.81
USP29Q9HBJ7 AC008403.3-201ENST00000598924 454 ntBASIC20.09■□□□□ 0.81
USP29Q9HBJ7 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.09■□□□□ 0.81
USP29Q9HBJ7 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP29Q9HBJ7 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.09■□□□□ 0.81
USP29Q9HBJ7 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.09■□□□□ 0.81
USP29Q9HBJ7 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.09■□□□□ 0.81
USP29Q9HBJ7 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP29Q9HBJ7 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
USP29Q9HBJ7 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms