Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
SCUBE3Q8IX30 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCUBE3Q8IX30 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
SCUBE3Q8IX30 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCUBE3Q8IX30 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
SCUBE3Q8IX30 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCUBE3Q8IX30 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SCUBE3Q8IX30 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.57■□□□□ 0.88
SCUBE3Q8IX30 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.57■□□□□ 0.88
SCUBE3Q8IX30 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
SCUBE3Q8IX30 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC20.57■□□□□ 0.88
SCUBE3Q8IX30 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.57■□□□□ 0.88
SCUBE3Q8IX30 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.57■□□□□ 0.88
SCUBE3Q8IX30 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.57■□□□□ 0.88
SCUBE3Q8IX30 AC004264.1-201ENST00000608354 794 ntBASIC20.57■□□□□ 0.88
SCUBE3Q8IX30 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.57■□□□□ 0.88
SCUBE3Q8IX30 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.57■□□□□ 0.88
SCUBE3Q8IX30 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SCUBE3Q8IX30 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC20.57■□□□□ 0.88
SCUBE3Q8IX30 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.57■□□□□ 0.88
SCUBE3Q8IX30 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCUBE3Q8IX30 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.56■□□□□ 0.88
SCUBE3Q8IX30 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SCUBE3Q8IX30 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
SCUBE3Q8IX30 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
SCUBE3Q8IX30 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCUBE3Q8IX30 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20.56■□□□□ 0.88
SCUBE3Q8IX30 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SCUBE3Q8IX30 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.56■□□□□ 0.88
SCUBE3Q8IX30 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.56■□□□□ 0.88
SCUBE3Q8IX30 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
SCUBE3Q8IX30 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.56■□□□□ 0.88
SCUBE3Q8IX30 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC20.56■□□□□ 0.88
SCUBE3Q8IX30 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
SCUBE3Q8IX30 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCUBE3Q8IX30 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.56■□□□□ 0.88
SCUBE3Q8IX30 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.56■□□□□ 0.88
SCUBE3Q8IX30 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SCUBE3Q8IX30 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.55■□□□□ 0.88
SCUBE3Q8IX30 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCUBE3Q8IX30 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCUBE3Q8IX30 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCUBE3Q8IX30 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SCUBE3Q8IX30 TUBB8P6-201ENST00000436895 1288 ntBASIC20.55■□□□□ 0.88
SCUBE3Q8IX30 KRT16P5-201ENST00000455284 522 ntBASIC20.55■□□□□ 0.88
SCUBE3Q8IX30 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
SCUBE3Q8IX30 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCUBE3Q8IX30 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SCUBE3Q8IX30 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.55■□□□□ 0.88
SCUBE3Q8IX30 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCUBE3Q8IX30 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCUBE3Q8IX30 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCUBE3Q8IX30 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SCUBE3Q8IX30 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.55■□□□□ 0.88
SCUBE3Q8IX30 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SCUBE3Q8IX30 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SCUBE3Q8IX30 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SCUBE3Q8IX30 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SCUBE3Q8IX30 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
SCUBE3Q8IX30 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCUBE3Q8IX30 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCUBE3Q8IX30 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.53■□□□□ 0.88
SCUBE3Q8IX30 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.53■□□□□ 0.88
SCUBE3Q8IX30 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.53■□□□□ 0.88
SCUBE3Q8IX30 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.53■□□□□ 0.88
SCUBE3Q8IX30 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.53■□□□□ 0.88
SCUBE3Q8IX30 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SCUBE3Q8IX30 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.53■□□□□ 0.88
SCUBE3Q8IX30 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
SCUBE3Q8IX30 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms