Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
ZNF549Q6P9A3 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ZNF549Q6P9A3 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
ZNF549Q6P9A3 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
ZNF549Q6P9A3 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
ZNF549Q6P9A3 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.7
ZNF549Q6P9A3 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
ZNF549Q6P9A3 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
ZNF549Q6P9A3 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.39■□□□□ 0.7
ZNF549Q6P9A3 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF549Q6P9A3 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF549Q6P9A3 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
ZNF549Q6P9A3 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
ZNF549Q6P9A3 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF549Q6P9A3 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.39■□□□□ 0.69
ZNF549Q6P9A3 ABHD17AP6-201ENST00000458502 1044 ntBASIC19.39■□□□□ 0.69
ZNF549Q6P9A3 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF549Q6P9A3 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF549Q6P9A3 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.39■□□□□ 0.69
ZNF549Q6P9A3 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF549Q6P9A3 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC19.39■□□□□ 0.69
ZNF549Q6P9A3 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.39■□□□□ 0.69
ZNF549Q6P9A3 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF549Q6P9A3 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF549Q6P9A3 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.39■□□□□ 0.69
ZNF549Q6P9A3 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.39■□□□□ 0.69
ZNF549Q6P9A3 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
ZNF549Q6P9A3 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
ZNF549Q6P9A3 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF549Q6P9A3 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF549Q6P9A3 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF549Q6P9A3 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF549Q6P9A3 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF549Q6P9A3 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF549Q6P9A3 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF549Q6P9A3 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF549Q6P9A3 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF549Q6P9A3 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
ZNF549Q6P9A3 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.38■□□□□ 0.69
ZNF549Q6P9A3 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC19.38■□□□□ 0.69
ZNF549Q6P9A3 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC19.38■□□□□ 0.69
ZNF549Q6P9A3 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC19.38■□□□□ 0.69
ZNF549Q6P9A3 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF549Q6P9A3 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.38■□□□□ 0.69
ZNF549Q6P9A3 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.38■□□□□ 0.69
ZNF549Q6P9A3 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.38■□□□□ 0.69
ZNF549Q6P9A3 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
ZNF549Q6P9A3 AC008687.6-201ENST00000596318 630 ntBASIC19.38■□□□□ 0.69
ZNF549Q6P9A3 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
ZNF549Q6P9A3 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF549Q6P9A3 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ZNF549Q6P9A3 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 AL032819.2-201ENST00000624543 2162 ntBASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 APTR-205ENST00000447009 902 ntTSL 2 BASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 UNC93B4-201ENST00000505679 747 ntBASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ZNF549Q6P9A3 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF549Q6P9A3 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF549Q6P9A3 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF549Q6P9A3 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF549Q6P9A3 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF549Q6P9A3 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.36■□□□□ 0.69
ZNF549Q6P9A3 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
ZNF549Q6P9A3 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
ZNF549Q6P9A3 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF549Q6P9A3 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF549Q6P9A3 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF549Q6P9A3 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF549Q6P9A3 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF549Q6P9A3 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
ZNF549Q6P9A3 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
ZNF549Q6P9A3 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.36■□□□□ 0.69
ZNF549Q6P9A3 MAX-217ENST00000557277 728 ntTSL 3 BASIC19.36■□□□□ 0.69
ZNF549Q6P9A3 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC19.36■□□□□ 0.69
ZNF549Q6P9A3 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC19.36■□□□□ 0.69
ZNF549Q6P9A3 AL121906.2-201ENST00000621597 723 ntBASIC19.36■□□□□ 0.69
ZNF549Q6P9A3 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms